GitHub - leschzinerlab/Appion: Useful scripts for interacting with Appion

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
RCT_upload.txt		RCT_upload.txt
README		README
appionBoxName_to_RelionBoxName.py		appionBoxName_to_RelionBoxName.py
appionCTFFIND_to_RelionCTFFIND_logFiles.py		appionCTFFIND_to_RelionCTFFIND_logFiles.py
appionCTFFIND_to_relionStar.py		appionCTFFIND_to_relionStar.py
bbox.csh		bbox.csh
boxem.csh		boxem.csh
check_git_status_allFolders.py		check_git_status_allFolders.py
convert_dm3_tif.py		convert_dm3_tif.py
ctfestimate_CsOverride.py		ctfestimate_CsOverride.py
ctfestimate_CsOverride_myami32.py		ctfestimate_CsOverride_myami32.py
make_uploader_file.py		make_uploader_file.py
signature64.exe		signature64.exe
symbolically_link_appion_micros_newName.py		symbolically_link_appion_micros_newName.py

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Useful scripts for using/interacting with Appion

============

make_uploader_file.py - create text file containing tilt micrograph pairs for appion
--> RCT_upload.txt - example output from make_uploader_file.py
bbox.csh - box out all .box/.mrc files using batchboxer
boxem.csh - automatically open EMAN's boxer program for all .mrc files within current working directory  
convert_dm3_tif.py - convert .dm3 images into .tif images