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feat: lifebit related changes for 22.10 version #29

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Merged
mageshwaran-lifebit merged 7 commits into from
Jan 23, 2026
+6 −6
Merged

feat: lifebit related changes for 22.10 version #29

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4b25ed0
feat: support preloading plugins
mageshwaran-lifebit Mar 15, 2024
f8cc2f4
chore: change logger
mageshwaran-lifebit Mar 15, 2024
2c1e82b
chore: change logger
mageshwaran-lifebit Mar 15, 2024
84a2466
chore: comment to avoid pipeline failure due to use of mismatch
mageshwaran-lifebit Mar 27, 2024
79b970c
chore: address Cursor comment
mageshwaran-lifebit Jan 23, 2026
b9a11fa
chore: address Copilot comment
mageshwaran-lifebit Jan 23, 2026
3de4af6
Merge branch '22.10.8' into 22-10-8-lifebit-change
mageshwaran-lifebit Jan 23, 2026
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12 changes: 6 additions & 6 deletions modules/nextflow/src/main/groovy/nextflow/cli/CmdRun.groovy
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Original file line number Diff line number Diff line change
Expand Up @@ -680,12 +680,12 @@ class CmdRun extends CmdBase implements HubOptions {
}
}

void preloadLifebitPlugins() {
def plugins = sysEnv.get('NXF_LIFEBIT_PRELOAD_PLUGINS')
if( plugins ) {
log.debug("Pre-loading Lifebit's plugins '${plugins}'...")
Plugins.load([plugins: plugins.tokenize(',')])
log.debug("Preloaded Lifebit's plugins '${plugins}'.")
private void preloadLifebitPlugins() {
def envPlugins = sysEnv.get('NXF_LIFEBIT_PRELOAD_PLUGINS')
if( envPlugins && envPlugins.trim().length() > 0 ) {
log.debug("Pre-loading Lifebit's plugins '${envPlugins}'...")
Plugins.load([plugins: envPlugins.tokenize(',').collect { it.trim() }.findAll { it }.unique()])

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log.debug("Preloaded Lifebit's plugins '${envPlugins}'.")
} else {
log.debug("No Lifebit's plugins to pre-load")
}
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