feat: lifebit related changes for 25.10 version#31
Merged
mageshwaran-lifebit merged 3 commits into25.10.3from Jan 23, 2026
Merged
feat: lifebit related changes for 25.10 version#31mageshwaran-lifebit merged 3 commits into25.10.3from
mageshwaran-lifebit merged 3 commits into25.10.3from
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mageshwaran-lifebit
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bfrgoncalves,
lifebit-davidsilva and
tiagofilipe12
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Pull request overview
This PR adds support for pre-loading a set of Lifebit-specified plugins before a Nextflow pipeline run, driven by a dedicated environment variable and wired into CmdRun’s startup flow.
Changes:
- Call
preloadLifebitPlugins()immediately afterPlugins.init()inCmdRun.run()so that preloaded plugins are available before script resolution and configuration. - Introduce
CmdRun.preloadLifebitPlugins()to readNXF_LIFEBIT_PRELOAD_PLUGINS, parse a comma-separated list of plugin IDs, and invokePlugins.loadwith the resulting list.
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tiagofilipe12
approved these changes
Jan 23, 2026
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This pull request introduces a new mechanism to support pre-loading Lifebit plugins before running a Nextflow pipeline. The change is focused on enhancing plugin management and initialization in the
CmdRunclass.Plugin management improvements:
preloadLifebitPluginstoCmdRunthat checks for theNXF_LIFEBIT_PRELOAD_PLUGINSenvironment variable and loads the specified plugins if present.preloadLifebitPluginsmethod into the initialization sequence ofCmdRun, ensuring Lifebit plugins are loaded before resolving the main script.