Welcome to the GenAIomic Assembly! This is a collaborative space for discussing cutting-edge publications, innovative ideas, and other fascinating topics at the intersection of Generative AI and Omics.
We meet weekly on Fridays from 1:30 PM to 2:30 PM PST via Zoom. To join, please join the Google group via send a email to gaiomcs+subscribe@googlegroups.com to get the zoom link.
Upcoming Meetings
May 23, 2025, No Meeting due to Li's conference!
May 16, 2025: facilitated by Li Lei
Pearce, J. D., Simmonds, S. E., Mahmoudabadi, G., Krishnan, L., Palla, G., Istrate, A. M., ... & Karaletsos, T. (2025). A Cross-Species Generative Cell Atlas Across 1.5 Billion Years of Evolution: The TranscriptFormer Single-cell Model. bioRxiv, 2025-04
https://doi.org/10.1101/2025.04.25.650731
May 9, 2025: facilitated by Li Lei
Discussion Paper: Zhou, Z., Riley, R., Kautsar, S., Wu, W., Egan, R., Hofmeyr, S., ... & Wang, Z. (2025). GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies. bioRxiv, 2025-01. https://doi.org/10.1101/2025.01.30.635558
May 2, 2025: facilitated by Li Lei
Discussion Paper: Zhou, Z., Ji, Y., Li, W., Dutta, P., Davuluri, R., & Liu, H. (2023). Dnabert-2: Efficient foundation model and benchmark for multi-species genome. arXiv preprint arXiv:2306.15006. https://doi.org/10.48550/arXiv.2306.15006
April 18, 2025: facilitated by Wejia Su
Discussion Paper: Cui, H., Wang, C., Maan, H. et al. scGPT: toward building a foundation model for single-cell multi-omics using generative AI. Nat Methods 21, 1470–1480 (2024). https://doi.org/10.1038/s41592-024-02201-0
April 11, 2025: NO meeting! Enjoy the spring break!
April 4, 2025: NO meeting! Enjoy the spring break!
March 28, 2025: Led by Li Lei
Discussion content: Evo2 github
Brixi, G., Durrant, M. G., Ku, J., Poli, M., Brockman, G., Chang, D., ... & Hie, B. (2025). Genome modeling and design across all domains of life with Evo 2. bioRxiv, 2025-02.
March 21, 2025: Led by Li Lei
Discussion Paper:
Brixi, G., Durrant, M. G., Ku, J., Poli, M., Brockman, G., Chang, D., ... & Hie, B. (2025). Genome modeling and design across all domains of life with Evo 2. bioRxiv, 2025-02.
Feel free to contribute ideas, suggest papers, or share insights with the group. Let’s push the boundaries of GenAI and Omics together!