Dev Quantities tabulated RBE correction#3
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lisaseckler merged 98 commits intolisaseckler:dev_quantities_RBEfrom Jun 18, 2025
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* Bug fix for matRad_plotAxisLabel, cube indexing for viualization * Bug fix for GUI, visQuantity warning popup
…fectJacobianFix constrained efect optimization, jacobian bug fix in sqrtBetaDose
* Minor bug, update cube dimension in writeMHD to make dimension permeutation effective * Minor bug fix, misisng matRad_cfg * Modify use of cube permutation and transformation matrix * Add permutation to vtk writer --------- Co-authored-by: Niklas Wahl <n.wahl@dkfz-heidelberg.de>
* Update matRad_importDicomRTPlan.m Fixed bug: The iso center value must not match any specific point on the axis. It should lie within the minimum and maximum values but not be equal to either of them. * Update matRad_importDicomCt.m fixed bug with indices * Update matRad_importDicomRTPlan.m fixed small bug, pln.radiationMode is defined as a property of object
* bug fix : Dicom double str2double conversion for the sliceThickness * bugFix: comparing char values instead of double * Typo * the PlnStfMatch triggers multiple errors
* bug fix : Dicom double str2double conversion for the sliceThickness * bugFix: comparing char values instead of double * Typo * the PlnStfMatch triggers multiple errors * bug Fix : 1) mistaken reference to shortName for multscen, 2) check for runDAO field in pln.propOpt --------- Co-authored-by: Niklas Wahl <n.wahl@dkfz-heidelberg.de>
* load scenario model * TOAPS interface axis change The beam direction is now alway along the topas world axis Z, and the patient is rotated accordingly * some sanitizing and small bugfixes --------- Co-authored-by: Niklas Wahl <n.wahl@dkfz.de>
# Conflicts: # matRad/gui/widgets/matRad_PlanWidget.m
Update to release v3 "Cleve"
Fixes for bugs identified at the MCB masterclass
* [synthetic CT example]: create dicoms for ct and sCT from liver phantom * [synthetic CT example]: fix bug with non-closing modal window, when dicom is loaded withour structure file * [synthetic CT example]: creating synthetic CT example for DVH diff calcs * Revert "[synthetic CT example]: create dicoms for ct and sCT from liver phantom" This reverts commit 9a92505. * [synthetic CT example]: DICOM import included, and changes from review are applied * [Synthetic CT example]: name is added to author list and citation * [synthetic CT example]: example is added to autotests --------- Co-authored-by: mlapaeva <34272754+MariyaLapaeva@users.noreply.github.com> Co-authored-by: Niklas Wahl <n.wahl@dkfz-heidelberg.de>
minor fix on example2
(cherry picked from commit b747bb0)
Fix Octave Tests (Remove Incompatable Image package)
…nstrained optimization
…ties_RBE # Conflicts: # matRad/doseCalc/+DoseEngines/matRad_ParticlePencilBeamEngineAbstract.m # matRad/matRad_fluenceOptimization.m # matRad/optimization/@matRad_OptimizationProblem/matRad_constraintJacobian.m # matRad/optimization/@matRad_OptimizationProblem/matRad_getJacobianStructure.m # matRad/optimization/projections/matRad_ConstantRBEProjection.m # matRad/optimization/projections/matRad_EffectProjection.m # matRad/optimization/projections/matRad_VariableRBEProjection.m
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