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1. mp-est mp-est Public

   MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function

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2. phybase phybase Public

   Phybase provides functions to read, write, manipulate, simulate, estimate, and summarize phylogenetic trees

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3. betnet betnet Public

   The Bayesian estimation of transmission networks

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4. BEST BEST Public

   BEST is a free phylogenetics package of programs to estimate the posterior distribution of species trees using multilocus molecular data

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5. book book Public

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6. begfe begfe Public

   BEGFE: Bayesian Estimation for Gene Family Evolution

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