Updated documentation

We updated the documentation in this release. In addition, we included R markdown documents for the two use cases.

Automation Submission Version

v2.1.1

Zachary's karate club

v2.1: Automation commands

Improvements:

• Export visualizations as SVG files.

Supported automation commands:

• Generate node groups from tabular data,
• Configure the visualization of groups,
• Select groups to visualize as contours,
• Launch eXamine, and
• Export SVG.

v2.0

Major update to improve: module layout, contour visualization, annotation lists, and Cytoscape node style integration