cytoHubba

This project is provided by Institute of Information Science, Academia Sinica. TAIWAN

Contact information:

Chung-Yen Lin (cylin@iis.sinica.edu.tw); LAB website: http://eln.iis.sinica.edu.tw

Team members:

Chia-Hao Chin ( Institute of Information Science, Academia Sinica, Taiwan)

Po-Wen Chen (Department of Computer Science and Imformation Engineering, National Taiwan University, Taiwan)

Chin-Wen Ho ( National Central University, Taiwan)

Shu-Hwa Chen ( Institute of Information Science, Academia Sinica, Taiwan)

Ming-Tat Ko ( Institute of Information Science, Academia Sinica, Taiwan)

Chung-Yen Lin ( Institute of Information Science, Academia Sinica, Taiwan)

cytoscape APP Store

https://apps.cytoscape.org/apps/cytohubba

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▲Description

Explore important nodes/hubs and fragile motifs in an interactome network by several topological algorithms including Degree, Edge Percolated Component (EPC), Maximum Neighborhood Component (MNC), Density of Maximum Neighborhood Component (DMNC), Maximal Clique Centrality (MCC) and centralities based on shortest paths, such as Bottleneck (BN), EcCentricity, Closeness, Radiality, Betweenness, and Stress.