Version 0.4.7

Major update:

• Iterative PCAiR/PCRelate and large sample size support
• Properly generates duplicate exclusions for family studies and separately creates file with optional exclusions for all relatedness.

Version 0.4.2

• Fixed upstream issue with bcftools by switching to docker container (also updated to 1.15)
• Made king interpretation fully flexible between robust and related files
• Fix for no internet

Version 0.4. Modularizable

A major update.

• Can be used as a module in other pipelines (must currently be downloaded first)
• Can run Admixture
• Ready to integrate new references
• Can download references as target
• Fixed sample callrate
• Many small fixes

Gannon

Major Changes:

• Environment control uses anaconda
• Numerous bugfixes
• Different types of QC are split into different rule files
• Each QC type is now selectable
• Fine grained control of union vs. intersection for reference panels

Bulbasaur

Packages and dependencies are dependent on HPC modules. Pre-conda version.