Conversation
update using python 3.8
python == 3.8
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
This pull request adds a random forest algorithm utilizing features from the Sine Coulomb Matrix and MagPie featurization algorithms. Here are the key details of the algorithm:
Sine Coulomb Matrix: Creates structural features based on Coulombic interactions within a periodic boundary condition (suitable for crystalline materials with known structures).
MagPie Features: Weighted elemental features derived from elemental data such as electronegativity, melting point, and electron affinity.
Both algorithms were executed within the Automatminer v1.0.3.20191111 framework for convenience, although no auto-featurization or AutoML processes were applied.
Data Processing
Data Cleaning: Features with more than 1% NaN samples were dropped. Missing samples were imputed using the mean of the training data.
Featurization:
For structure problems: Both Sine Coulomb Matrix and MagPie features were applied.
For problems without structure: Only MagPie features were applied.
Model Details
Random Forest: Utilizes 500 estimators.
Hyperparameter Tuning: None performed. A large, constant number of trees were used in constructing each fold's model, using the entire training+validation set as training data for the random forest.
Additional Information
Raw Data and Example Notebook: Available on the matbench repository.
Included files