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matiollipt/README.md

Cleverson Matiolli, Ph.D.

Data Scientist · Bioinformatics · ML/AI Consultant

Lisbon, Portugal · Campinas, Brazil

📧 Email | 🔗 LinkedIn | 🌐 Portfolio


Profile

Ph.D. in Genetics & Molecular Biology with specialization in Big Data and Machine Learning. I bridge wet-lab biology, data science, and AI/ML frameworks to deliver practical, data-driven solutions in agriculture, biotechnology, and medicine.

  • 15+ peer-reviewed publications (h-index 12)
  • International consulting across academia and industry (Brazil, USA, Portugal)
  • Experience in:
    • delivering solutions to my clients (medicine, engineering, publishing)
    • securing national and international competitive funding
    • coordinating interdisciplinary projects
    • mentoring MSc/PhD students and training personnel

Expertise

Python R SQL PyTorch scikit-learn Hugging Face TensorFlow LangChain Linux Git


Selected Projects

  • 🌱 Agrilyzer – ML platform integrating geospatial climate data (NASA POWER) for adaptive crop planning.
  • ⚕️ Precision Medicine – Predictive models for patient outcome stratification using transcriptomic data.
  • 🦴 3D-Printed Implants – Regression pipelines predicting biomechanical performance from fabrication parameters.
  • 🔗 GMN (Graph Molecular Networks) – In development: curated PPI dataset for protein–protein interaction prediction and functional annotation.
  • 📰 Fake News Detection – Capstone project in Unicamp’s ML specialization, coordinated a team of 5 to build transformer-based NLP pipeline with XAI visualization.

Key Publications

  • Plant Physiology (2011): Synergic regulation of bZIP63 gene (Arabidopsis) by energy and drought
  • Current Biology (2018): Circadian entrainment in Arabidopsis by sugar-responsive bZIP63
  • New Phytologist (2021): Sugar-responsive circadian clock regulator bZIP63 modulates growth
  • Frontiers in Plant Science (2022): Post-translational modifications and carbon metabolism (Review)
  • Planta (2024): SUMOylation of rice DELLA SLR1 enhances yield under salt stress

Full list → Google Scholar


Current Focus

  • Automated pipelines for data processing and exploratory analysis
  • Development of AI agents and workflows (Coursera: Building AI Agents and Agentic Workflows)
  • Sandboxing with local LLMs (Ollama, llama.cpp, LiteLLM, LangChain)
  • Multi-modal local models & stable diffusion for branding and science communication
  • Integrated approach: AI Agents + Data Science + ML for precision agriculture and applied biosciences

Popular repositories Loading

  1. matiollipt matiollipt Public

    Config files for my GitHub profile.

  2. matiollipt.github.io matiollipt.github.io Public

    HTML

  3. gmn gmn Public

    GraphletMolNet is a graphlet-based model to predict molecular interactions of proteins and ligands.

    Python