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Updating from ETE2 to ETE3#80

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JosephRyanPeterson wants to merge 3 commits intomattb112885:masterfrom

JosephRyanPeterson:master

Commits on Sep 16, 2016

Updated ITEP to use ETE3 rather than ETE2.
JosephRyanPeterson
committed
Updated install instructions to use pip instead of easy_install
JosephRyanPeterson
committed

Commits on Sep 19, 2016

Fix column off by 1 error when creating the neighborhood tree.
JosephRyanPeterson
committed