Test and build wheels with Torch 2.6 and Python 3.13

.github/workflows/build-wheels.yml

@@ -65,7 +65,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: install dependencies
         run: python -m pip install cibuildwheel twine
@@ -99,7 +99,7 @@ jobs:
     name: ${{ matrix.name }} (torch v${{ matrix.torch-version }})
     strategy:
       matrix:
-        torch-version: ['2.1', '2.2', '2.3', '2.4', '2.5']
+        torch-version: ['2.1', '2.2', '2.3', '2.4', '2.5', '2.6']
         arch: ['arm64', 'x86_64']
         os: ['ubuntu-22.04', 'ubuntu-22.04-arm', 'macos-13', 'macos-14', 'windows-2022']
         exclude:
@@ -113,6 +113,7 @@ jobs:
           - {os: macos-13, arch: x86_64, torch-version: '2.3'}
           - {os: macos-13, arch: x86_64, torch-version: '2.4'}
           - {os: macos-13, arch: x86_64, torch-version: '2.5'}
+          - {os: macos-13, arch: x86_64, torch-version: '2.6'}
         include:
           # add `cibw-arch` and `rust-target` to the different configurations
           - name: x86_64 Linux
@@ -140,12 +141,22 @@ jobs:
             arch: x86_64
             rust-target: x86_64-pc-windows-msvc
             cibw-arch: AMD64
-          # add the right python version for each torch version
-          - {torch-version: '2.1',  python-version: '3.11', cibw-python: 'cp311-*'}
-          - {torch-version: '2.2',  python-version: '3.12', cibw-python: 'cp312-*'}
-          - {torch-version: '2.3',  python-version: '3.12', cibw-python: 'cp312-*'}
-          - {torch-version: '2.4',  python-version: '3.12', cibw-python: 'cp312-*'}
-          - {torch-version: '2.5',  python-version: '3.12', cibw-python: 'cp312-*'}
+          # add the right python version image for each torch version
+          - {torch-version: '2.1', cibw-python: 'cp311-*'}
+          - {torch-version: '2.2', cibw-python: 'cp312-*'}
+          - {torch-version: '2.3', cibw-python: 'cp312-*'}
+          - {torch-version: '2.4', cibw-python: 'cp312-*'}
+          - {torch-version: '2.5', cibw-python: 'cp312-*'}
+          - {torch-version: '2.6', cibw-python: 'cp312-*'}
+          # set the right manylinux image to use
+          - {torch-version: '2.1', manylinux-version: "2014"}
+          - {torch-version: '2.2', manylinux-version: "2014"}
+          - {torch-version: '2.3', manylinux-version: "2014"}
+          - {torch-version: '2.4', manylinux-version: "2014"}
+          - {torch-version: '2.5', manylinux-version: "2014"}
+          # only torch >+ 2.6 on arm64-linux needs the newer manylinux
+          - {torch-version: '2.6', arch: arm64, manylinux-version: "_2_28"}
+          - {torch-version: '2.6', arch: x86_64, manylinux-version: "2014"}
     steps:
       - uses: actions/checkout@v4
         with:
@@ -160,14 +171,17 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: "3.13"
 
       - name: install dependencies
         run: python -m pip install cibuildwheel
 
       - name: build manylinux with rust docker image
         if: matrix.os == 'ubuntu-22.04' || matrix.os == 'ubuntu-22.04-arm'
-        run: docker buildx build -t rustc-manylinux2014_${{ matrix.cibw-arch }} python/scripts/rustc-manylinux2014_${{ matrix.cibw-arch }}
+        run: |
+           docker buildx build \
+               -t rustc-manylinux${{ matrix.manylinux-version }}_${{ matrix.cibw-arch }} \
+               python/scripts/rustc-manylinux${{ matrix.manylinux-version }}_${{ matrix.cibw-arch }}
 
       - name: build featomic-torch wheel
         run: python -m cibuildwheel python/featomic_torch
@@ -176,8 +190,8 @@ jobs:
           CIBW_SKIP: "*musllinux*"
           CIBW_ARCHS: ${{ matrix.cibw-arch }}
           CIBW_BUILD_VERBOSITY: 1
-          CIBW_MANYLINUX_X86_64_IMAGE: rustc-manylinux2014_x86_64
-          CIBW_MANYLINUX_AARCH64_IMAGE: rustc-manylinux2014_aarch64
+          CIBW_MANYLINUX_X86_64_IMAGE: rustc-manylinux${{ matrix.manylinux-version }}_x86_64
+          CIBW_MANYLINUX_AARCH64_IMAGE: rustc-manylinux${{ matrix.manylinux-version }}_aarch64
           # FEATOMIC_NO_LOCAL_DEPS is set to 1 when building a tag of
           # featomic-torch, which will force to use the version of featomic
           # already released on PyPI. Otherwise, this will use the version of
@@ -245,7 +259,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: install dependencies
         run: python -m pip install twine wheel
@@ -294,7 +308,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: build featomic sdist
         run: |

.github/workflows/coverage.yml

@@ -23,7 +23,7 @@ jobs:
       - name: setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: setup rust
         uses: dtolnay/rust-toolchain@master

.github/workflows/docs.yml

@@ -31,7 +31,7 @@ jobs:
       - name: setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: install dependencies
         run: |

.github/workflows/python-tests.yml

@@ -21,11 +21,11 @@ jobs:
           - os: ubuntu-22.04
             python-version: "3.9"
           - os: ubuntu-22.04
-            python-version: "3.12"
+            python-version: "3.13"
           - os: macos-14
-            python-version: "3.12"
+            python-version: "3.13"
           - os: windows-2022
-            python-version: "3.12"
+            python-version: "3.13"
     steps:
       - uses: actions/checkout@v4
 
@@ -68,7 +68,7 @@ jobs:
     name: Python ${{ matrix.python-version }} / check build
     strategy:
       matrix:
-        python-version: ['3.9', '3.12']
+        python-version: ['3.9', '3.13']
         os: [ubuntu-22.04]
     steps:
       - uses: actions/checkout@v4

.github/workflows/rust-tests.yml

@@ -90,7 +90,7 @@ jobs:
         uses: actions/setup-python@v5
         if: "!matrix.container"
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: setup rust
         uses: dtolnay/rust-toolchain@master

.github/workflows/torch-tests.yml

@@ -19,33 +19,32 @@ jobs:
       matrix:
         include:
           - os: ubuntu-22.04
-            torch-version: 1.12.*
+            torch-version: "1.12"
             python-version: "3.9"
             cargo-test-flags: --release
 
           - os: ubuntu-22.04
-            torch-version: 2.3.*
-            python-version: "3.12"
+            torch-version: "2.6"
+            python-version: "3.13"
             cargo-test-flags: --release
             do-valgrind: true
 
           - os: ubuntu-20.04
             container: ubuntu:20.04
             extra-name: ", cmake 3.16"
-            torch-version: 2.5.*
-            python-version: "3.12"
+            torch-version: "2.6"
+            python-version: "3.13"
             cargo-test-flags: ""
             cxx-flags: -fsanitize=undefined -fsanitize=address -fno-omit-frame-pointer -g
 
           - os: macos-14
-            torch-version: 2.3.*
-            python-version: "3.12"
+            torch-version: "2.6"
+            python-version: "3.13"
             cargo-test-flags: --release
 
           - os: windows-2022
-            # Torch 2.3.0 is broken on Windows, and 2.2 has https://github.com/pytorch/pytorch/issues/118862
-            torch-version: 2.1.*
-            python-version: "3.11"
+            torch-version: "2.6"
+            python-version: "3.13"
             cargo-test-flags: --release
 
     steps:

featomic-torch/tests/utils/mod.rs

@@ -84,7 +84,7 @@ pub fn setup_pytorch(build_dir: PathBuf) -> PathBuf {
         .expect("failed to run python");
     assert!(status.success(), "failed to run `python -m pip install --upgrade pip`");
 
-    let torch_version = std::env::var("FEATOMIC_TORCH_TEST_VERSION").unwrap_or("2.3.*".into());
+    let torch_version = std::env::var("FEATOMIC_TORCH_TEST_VERSION").unwrap_or("2.6.*".into());
     let status = Command::new(&python)
         .arg("-m")
         .arg("pip")

featomic-torch/tests/valgrind.supp

@@ -22,6 +22,7 @@
    fun:malloc
    ...
    fun:mkl_serv_malloc
+   ...
    fun:mkl_serv_domain_get_max_threads
    ...
 }

python/scripts/rustc-manylinux_2_28_aarch64/Dockerfile

@@ -0,0 +1,11 @@
+# Use manylinux docker image as a base
+FROM quay.io/pypa/manylinux_2_28_aarch64
+
+RUN yum install git -y
+RUN git config --global --add safe.directory /code
+
+# Download rustup-init asn install
+RUN curl https://sh.rustup.rs -sSf | sh -s -- -y --profile minimal --default-toolchain 1.75
+
+ENV PATH="/root/.cargo/bin:${PATH}"
+ENV RUST_BUILD_TARGET="aarch64-unknown-linux-gnu"