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Add support for extra-chroms (string chromosomes)#30

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bunop wants to merge 7 commits intomfranberg:masterfrom
bunop:issue-29
Open

Add support for extra-chroms (string chromosomes)#30
bunop wants to merge 7 commits intomfranberg:masterfrom
bunop:issue-29

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@bunop bunop commented Oct 9, 2021

Dear @mfranberg ,

I found some time to try to change how your library read chromosomes in order to support string chromosome. I've changed code and tests accordingly and seems to me that I can read my string chromosomes properly. I've also updated the README section, since it seems to me it was a little outdated.

If you could revise this changes and give me a feedback, will be very helpful.


This PR will close #29

bunop added 7 commits October 8, 2021 19:38
ignoring cmake generated files
parse_chr was identical to parse_string. Now we read text using the same parse_str function
testing with X and Contig123456 chromosomes
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Add support for extra-chroms (string chromosomes)

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