Search results

Quadratic time complexity in scripts/generate_foldseek_db.py

Status: Open.

#41 In mheinzinger/ProstT5;

· idavi-bcs opened on Jul 23, 2025

Estimated time for foldseek database generation

Status: Open.

#40 In mheinzinger/ProstT5;

· narsapuramvijaykumar opened on Mar 29, 2025

Generating a MSA from the 3Di

Status: Open.

#39 In mheinzinger/ProstT5;

· iwilkie opened on Feb 12, 2025

Not able to translate long protein sequences to 3Di

Status: Open.

#38 In mheinzinger/ProstT5;

· cheche0109 opened on Jan 27, 2025

3Di embedding cosine distance calculation

Status: Open.

#36 In mheinzinger/ProstT5;

· santule opened on Dec 6, 2024

Foldseek annotation of predicted 3Di structure gives no results

Status: Open.

#34 In mheinzinger/ProstT5;

· Jigyasa3 opened on Oct 31, 2024

PDB data link Error

Status: Open.

#33 In mheinzinger/ProstT5;

· zj-liu opened on Sep 24, 2024

Training ProstT5 MLM to predict full sequence or labels

Status: Open.

#32 In mheinzinger/ProstT5;

· BSharmi opened on Sep 11, 2024

ProstT5-encoder + CNN model training scripts

Status: Open.

#31 In mheinzinger/ProstT5;

· rakeshr10 opened on Aug 21, 2024

Strange results for AA2fold translation

Status: Open.

#30 In mheinzinger/ProstT5;

· CalvinRusley opened on Aug 8, 2024

Limit AA alphabet when generating from 3Di rep

Status: Open.

#28 In mheinzinger/ProstT5;

· neuwirtter opened on Jul 19, 2024

translate.py with default settings generates long stretch of simple repeats

Status: Open.

#27 In mheinzinger/ProstT5;

· yzhang-github-pub opened on Jul 2, 2024