add tests #10
Open
add tests #10
Annotations
10 errors and 5 warnings
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] AxiosError
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] getLineGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Network I/O Read (MB)"},"timeTicks":{"unit":"auto"}},"lines":[{"label":"Read","color":"#be4d25","points":[{"x":1774250076002,"y":0},{"x":1774250081000,"y":303},{"x":1774250085998,"y":0},{"x":1774250091000,"y":0},{"x":1774250095999,"y":69},{"x":1774250100998,"y":0},{"x":1774250106009,"y":0},{"x":1774250110998,"y":0},{"x":1774250116000,"y":0},{"x":1774250120999,"y":103},{"x":1774250126004,"y":1},{"x":1774250131001,"y":3},{"x":1774250135998,"y":25},{"x":1774250140999,"y":0},{"x":1774250146000,"y":3},{"x":1774250151002,"y":0},{"x":1774250155996,"y":35},{"x":1774250160999,"y":193},{"x":1774250166000,"y":262},{"x":1774250171002,"y":268},{"x":1774250175999,"y":261},{"x":1774250180998,"y":261},{"x":1774250185999,"y":261},{"x":1774250190999,"y":267},{"x":1774250195998,"y":267},{"x":1774250200999,"y":81},{"x":1774250205999,"y":0},{"x":1774250210998,"y":0},{"x":1774250215999,"y":0},{"x":1774250220998,"y":0},{"x":1774250225998,"y":0},{"x":1774250230998,"y":0},{"x":1774250235998,"y":0},{"x":1774250240998,"y":0},{"x":1774250245999,"y":0},{"x":1774250250999,"y":0},{"x":1774250255998,"y":0},{"x":1774250260998,"y":0},{"x":1774250266003,"y":0},{"x":1774250271002,"y":0},{"x":1774250276000,"y":0},{"x":1774250280998,"y":0},{"x":1774250285998,"y":0},{"x":1774250291008,"y":0},{"x":1774250296000,"y":0},{"x":1774250301000,"y":0},{"x":1774250305998,"y":0},{"x":1774250311007,"y":0},{"x":1774250315999,"y":0},{"x":1774250320998,"y":0},{"x":1774250325998,"y":0},{"x":1774250330998,"y":0},{"x":1774250336001,"y":0},{"x":1774250340998,"y":0},{"x":1774250345998,"y":0},{"x":1774250350998,"y":0},{"x":1774250355999,"y":0},{"x":1774250360998,"y":0},{"x":1774250365998,"y":0},{"x":1774250371003,"y":0},{"x":1774250376002,"y":0},{"x":1774250380998,"y":0},{"x":1774250385998,"y":0},{"x":1774250390997,"y":0},{"x":1774250395998,"y":107},{"x":1774250400998,"y":0},{"x":1774250406001,"y":0},{"x":1774250410998,"y":3},{"x":1774250415999,"y":83},{"x":1774250420998,"y":86},{"x":1774250425998,"y":177},{"x":1774250431000,"y":7},{"x":1774250435998,"y":0},{"x":1774250440997,"y":0},{"x":1774250446002,"y":0},{"x":1774250450998,"y":0},{"x":1774250456000,"y":0},{"x":1774250460998,"y":0},{"x":1774250466004,"y":0},{"x":1774250470997,"y":0},{"x":1774250475998,"y":0},{"x":1774250480998,"y":0},{"x":1774250485999,"y":6},{"x":1774250490998,"y":0},{"x":1774250495996,"y":0},{"x":1774250500999,"y":0},{"x":1774250505999,"y":0},{"x":1774250510998,"y":0},{"x":1774250515998,"y":0},{"x":1774250520998,"y":1},{"x":1774250525998,"y":0},{"x":1774250530999,"y":0},{"x":1774250535998,"y":0},{"x":1774250540998,"y":0},{"x":1774250546001,"y":0},{"x":1774250550998,"y":0},{"x":1774250555997,"y":0},{"x":1774250560998,"y":0},{"x":1774250565997,"y":0},{"x":1774250570999,"y":0},{"x":1774250576003,"y":0},{"x":1774250580998,"y":0},{"x":1774250585998,"y":0},{"x":1774250590999,"y":0},{"x":1774250596002,"y":0},{"x":1774250600998,"y":0},{"x":1774250606005,"y":0},{"x":1774250610998,"y":0},{"x":1774250615998,"y":0},{"x":1774250621008,"y":0},{"x":1774250626006,"y":0},{"x":1774250631001,"y":0},{"x":1774250636005,"y":0},{"x":1774250640999,"y":0},{"x":1774250646007,"y":0},{"x":1774250650998,"y":0},{"x":1774250656001,"y":0},{"x":1774250661001,"y":0},{"x":1774250665998,"y":1},{"x":1774250670998,"y":22},{"x":1774250675998,"y":0},{"x":1774250681008,"y":0},{"x":1774250686006,"y":0},{"x":1774250691003,"y":11},{"x":1774250695999,"y":0},{"x":1774250701001,"y":0},{"x":1774250705996,"y":1},{"x":1774250710999,"y":0}]}]}
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Post Run neurogenomics/rworkflows@master
AxiosError: Request failed with status code 403
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] AxiosError
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"Memory Usage (MB)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"Used","color":"#377eb899","points":[{"x":1774250076002,"y":2950.796875},{"x":1774250081000,"y":2924.25},{"x":1774250085998,"y":2859.921875},{"x":1774250091000,"y":2901.5},{"x":1774250095999,"y":2790.3125},{"x":1774250100998,"y":2819.953125},{"x":1774250106009,"y":2792.671875},{"x":1774250110998,"y":2790.953125},{"x":1774250116000,"y":2897.234375},{"x":1774250120999,"y":2578.171875},{"x":1774250126004,"y":2765.640625},{"x":1774250131001,"y":2883},{"x":1774250135998,"y":2912.40625},{"x":1774250140999,"y":2844.4375},{"x":1774250146000,"y":1548.71875},{"x":1774250151002,"y":1485.890625},{"x":1774250155996,"y":1963.671875},{"x":1774250160999,"y":1962.234375},{"x":1774250166000,"y":1947.609375},{"x":1774250171002,"y":1995.9375},{"x":1774250175999,"y":2027.390625},{"x":1774250180998,"y":2066.78125},{"x":1774250185999,"y":2056.71875},{"x":1774250190999,"y":2086.140625},{"x":1774250195998,"y":2052.921875},{"x":1774250200999,"y":2360.40625},{"x":1774250205999,"y":2556.359375},{"x":1774250210998,"y":2560.453125},{"x":1774250215999,"y":2535.203125},{"x":1774250220998,"y":2536.28125},{"x":1774250225998,"y":2538.15625},{"x":1774250230998,"y":2443.09375},{"x":1774250235998,"y":1622.15625},{"x":1774250240998,"y":1705.140625},{"x":1774250245999,"y":1695.328125},{"x":1774250250999,"y":1735.203125},{"x":1774250255998,"y":1767.453125},{"x":1774250260998,"y":1746.171875},{"x":1774250266003,"y":1803.65625},{"x":1774250271002,"y":1800.015625},{"x":1774250276000,"y":1803.53125},{"x":1774250280998,"y":1963.03125},{"x":1774250285998,"y":1836.40625},{"x":1774250291008,"y":1925.75},{"x":1774250296000,"y":1848.25},{"x":1774250301000,"y":1893.515625},{"x":1774250305998,"y":1933.40625},{"x":1774250311007,"y":1928.484375},{"x":1774250315999,"y":1928.609375},{"x":1774250320998,"y":1929.65625},{"x":1774250325998,"y":1934.5},{"x":1774250330998,"y":1939.0625},{"x":1774250336001,"y":1988.90625},{"x":1774250340998,"y":1992.703125},{"x":1774250345998,"y":1993.703125},{"x":1774250350998,"y":2004.34375},{"x":1774250355999,"y":2013.46875},{"x":1774250360998,"y":1838.078125},{"x":1774250365998,"y":1877.09375},{"x":1774250371003,"y":1891.421875},{"x":1774250376002,"y":1877.453125},{"x":1774250380998,"y":1877.515625},{"x":1774250385998,"y":1877.921875},{"x":1774250390997,"y":1496.609375},{"x":1774250395998,"y":1743.890625},{"x":1774250400998,"y":1821.390625},{"x":1774250406001,"y":2007.453125},{"x":1774250410998,"y":2108.5},{"x":1774250415999,"y":2225.953125},{"x":1774250420998,"y":2309.265625},{"x":1774250425998,"y":2310.84375},{"x":1774250431000,"y":2456.921875},{"x":1774250435998,"y":2560.96875},{"x":1774250440997,"y":2578.734375},{"x":1774250446002,"y":2516.078125},{"x":1774250450998,"y":2826.046875},{"x":1774250456000,"y":2729.609375},{"x":1774250460998,"y":2684.21875},{"x":1774250466004,"y":2704.5625},{"x":1774250470997,"y":2624.953125},{"x":1774250475998,"y":2550.578125},{"x":1774250480998,"y":2027.84375},{"x":1774250485999,"y":2358.828125},{"x":1774250490998,"y":2736.953125},{"x":1774250495996,"y":2749.359375},{"x":1774250500999,"y":2693.703125},{"x":1774250505999,"y":2644.671875},{"x":1774250510998,"y":2829.46875},{"x":1774250515998,"y":2815.921875},{"x":1774250520998,"y":2612.46875},{"x":1774250525998,"y":2607.203125},{"x":1774250530999,"y":2502.125},{"x":1774250535998,"y":2810.265625},{"x":1774250540998,"y":2808.796875},{"x":1774250546001,"y":2767.96875},{"x":1774250550998,"y":2729.390625},{"x":1774250555997,"y":2857.46875},{"x":1774250560998,"y":2844.921875},{"x":1774250565997,"y":2868.640625},{"x":1774250570999,"y":2844.984375},{"x":1774250576003,"y":2937.96875},{"x":1774250580998,"y":2798.203125},{"x":1774250585998,"y":2964.609375},{"x":1774250590999,"y":2315.71875},{"x":1774250596002,"y":2347.015625},{"x":1774250600998,"y":2339.65625},{"x":1774250606005,"y":2381.421875},{"x":1774250610998,"y":2346.140625},{"x":1774250615998,"y":2403.71875},{"x":1774250621008,"y":2
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Post Run neurogenomics/rworkflows@master
AxiosError: Request failed with status code 403
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] AxiosError
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] getStackedAreaGraph {"options":{"width":1000,"height":500,"xAxis":{"label":"Time"},"yAxis":{"label":"CPU Load (%)"},"timeTicks":{"unit":"auto"}},"areas":[{"label":"User Load","color":"#e41a1c99","points":[{"x":1774250076002,"y":39.79474866392998},{"x":1774250081000,"y":39.38379102478232},{"x":1774250085998,"y":37.39946380697051},{"x":1774250091000,"y":42.89526350900601},{"x":1774250095999,"y":41.755319148936174},{"x":1774250100998,"y":61.754855994641666},{"x":1774250106009,"y":33.73253493013972},{"x":1774250110998,"y":28.045515394912986},{"x":1774250116000,"y":23.599999999999998},{"x":1774250120999,"y":24.715338245144007},{"x":1774250126004,"y":32.73213092852371},{"x":1774250131001,"y":19.84074319840743},{"x":1774250135998,"y":20.212765957446805},{"x":1774250140999,"y":31.434316353887397},{"x":1774250146000,"y":12.967914438502673},{"x":1774250151002,"y":25.23489932885906},{"x":1774250155996,"y":27.81854569713142},{"x":1774250160999,"y":20.38770053475936},{"x":1774250166000,"y":11.579651941097724},{"x":1774250171002,"y":13.618157543391188},{"x":1774250175999,"y":12.173913043478262},{"x":1774250180998,"y":14.953271028037381},{"x":1774250185999,"y":12.449799196787147},{"x":1774250190999,"y":12.801608579088471},{"x":1774250195998,"y":11.407605070046698},{"x":1774250200999,"y":15.39491298527443},{"x":1774250205999,"y":13.933333333333334},{"x":1774250210998,"y":7.325268817204302},{"x":1774250215999,"y":11.466666666666667},{"x":1774250220998,"y":14.209115281501342},{"x":1774250225998,"y":16.75603217158177},{"x":1774250230998,"y":14.2761841227485},{"x":1774250235998,"y":16.040268456375838},{"x":1774250240998,"y":21.73333333333333},{"x":1774250245999,"y":14.381270903010032},{"x":1774250250999,"y":17.466666666666665},{"x":1774250255998,"y":31.44192256341789},{"x":1774250260998,"y":26.35090060040027},{"x":1774250266003,"y":25.233022636484687},{"x":1774250271002,"y":27.892976588628766},{"x":1774250276000,"y":29.01934623082055},{"x":1774250280998,"y":29.86666666666667},{"x":1774250285998,"y":11.096256684491978},{"x":1774250291008,"y":18.442077230359523},{"x":1774250296000,"y":31.062124248496993},{"x":1774250301000,"y":14.123159303882197},{"x":1774250305998,"y":5.030181086519115},{"x":1774250311007,"y":6.044325050369376},{"x":1774250315999,"y":5.174731182795699},{"x":1774250320998,"y":6.518817204301075},{"x":1774250325998,"y":6.074766355140187},{"x":1774250330998,"y":8.445040214477212},{"x":1774250336001,"y":7.099799062290691},{"x":1774250340998,"y":6.51443922095366},{"x":1774250345998,"y":5.241935483870968},{"x":1774250350998,"y":7.0517125587642715},{"x":1774250355999,"y":5.514458641560188},{"x":1774250360998,"y":11.363636363636363},{"x":1774250365998,"y":11.507402422611037},{"x":1774250371003,"y":6.975184439973173},{"x":1774250376002,"y":4.969778374748153},{"x":1774250380998,"y":7.065948855989233},{"x":1774250385998,"y":5.443548387096774},{"x":1774250390997,"y":11.453449430676491},{"x":1774250395998,"y":12.666666666666668},{"x":1774250400998,"y":18.10865191146881},{"x":1774250406001,"y":14.247669773635153},{"x":1774250410998,"y":24.715338245144007},{"x":1774250415999,"y":22.712090848363392},{"x":1774250420998,"y":19.826435246995995},{"x":1774250425998,"y":21.695594125500666},{"x":1774250431000,"y":24.564926372155288},{"x":1774250435998,"y":45.5026455026455},{"x":1774250440997,"y":49.764309764309765},{"x":1774250446002,"y":31.491344873501998},{"x":1774250450998,"y":33.75668449197861},{"x":1774250456000,"y":31.6622691292876},{"x":1774250460998,"y":68.95622895622895},{"x":1774250466004,"y":61.42571618920719},{"x":1774250470997,"y":63.3934535738143},{"x":1774250475998,"y":69.2154255319149},{"x":1774250480998,"y":59.919839679358724},{"x":1774250485999,"y":52.57181028724115},{"x":1774250490998,"y":69.8874917273329},{"x":1774250495996,"y":74.01205626255862},{"x":1774250500999,"y":80.66666666666666},{"x":1774250505999,"y":77.35470941883767},{"x":1774250510998,"y":75.14990006662225},{"x":1774250515998,"y":69.02065289806796},{"x":1774250520998,"y":69.826435246996},{"x":1774250525998,"y":72.53333333333333},{"x":17742505309
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Post Run neurogenomics/rworkflows@master
AxiosError: Request failed with status code 403
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Post Run neurogenomics/rworkflows@master
[Workflow Telemetry] AxiosError
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Complete job
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v4, actions/checkout@v4, catchpoint/workflow-telemetry-action@v2, r-lib/actions/setup-pandoc@v2, r-lib/actions/setup-r@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
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Run neurogenomics/rworkflows@master
SystemRequirements specified C++11: support has been removed
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Run neurogenomics/rworkflows@master
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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Run neurogenomics/rworkflows@master
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Run neurogenomics/rworkflows@master
harfbuzz 12.3.2 is already installed and up-to-date.
To reinstall 12.3.2, run:
brew reinstall harfbuzz
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Loading