Predict Undesirable Cancer Events

Pipelines for data preparation, model development, and model evaluation for prediction of undesirable cancer events (i.e. symptom deterioration, emergency department visits, etc).

Data Location

Please see ml4oncology/make-clinical-dataset.

Getting started

git clone https://github.com/ml4oncology/PredUCE
pip install -e ".[dev]"

# optional
pre-commit install
nbstripout --install --keep-output

Instructions

python <project folder>/scripts/run.py

Project Organization

├── acu                <- Acute care use
│   ├── notebooks      <- Jupyter notebooks
│   ├── scripts        <- Python scripts
│   └── src            <- Python package where the main functionality goes
├── symp               <- Symptom deterioration
│   ├── notebooks
│   ├── scripts
│   └── src
├── shared             <- Shared modules between different projects
├── pyproject.toml     <- Build configuration
├── .env               <- Environment variables (i.e. personal keys)