oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

Please try

• python MafAnnotator.py -h
• python FusionAnnotator.py -h
• python CnaAnnotator.py -h
• python ClinicalDataAnnotator.py -h
• python OncoKBPlots.py -h

Example input files are under data. An example script is here: example.sh

We recommend processing MAF files by vcf2maf with MSK override isoforms before using the MafAnnotator here.