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Update processClouds #4

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450f655
Updata processClouds
phantatbach Oct 29, 2024
e8f6920
Update HDBSCAN.Rmd
phantatbach Oct 30, 2024
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5 changes: 3 additions & 2 deletions vignettes/HDBSCAN.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -59,8 +59,9 @@ res <- map(setNames(models, models),

# I would normally make one of these files for all my lemmas and store it within the github directory above the lemma subdirectories
to_write <- list()
to_write[lemma] <- res
write_rds(to_write, file.path(output_dir, "hdbscan.rds"))
# to_write[lemma] <- res # This does not work as you need to assign models, not lemma
to_write[models] <- res
write_rds(to_write, file.path(output_dir, paste0(lemma, ".rds")))
```

We can also use `purrr::map()` to create a named list gathering the full data for each lemma)
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2 changes: 1 addition & 1 deletion vignettes/processClouds.Rmd
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Expand Up @@ -169,7 +169,7 @@ distmtx <- read_tsv(file.path(output_dir, paste0(lemma, ".models.dist.tsv"))) %>
pam_data <- pam(distmtx, k = k)
medoid_data <- pam_data$clusinfo %>%
as_tibble() %>%
mutate(medoids = pam_data$medoids, medoid_i = seq(k))
mutate(medoid = pam_data$medoids, medoid_i = seq(k)) # medoid in singular or NephoVis would not be able to read it

write_tsv(medoid_data, file.path(output_dir, paste0(lemma, ".medoids.tsv")))
```
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