RNA-Folding-Problem

RNA Project

This repository contains scripts for analyzing RNA structures and computing interaction profiles and pseudo-energies.

Scripts

1. training.py

• Description: Import libraries, parse PDB data, calculate distance distributions, compute observed and reference frequencies, and compute log-ratios.

2. plotting.py

• Description: Plot interaction profiles using pseudo-energies for different nucleotide pairs.

3. scoring.py

• Description: Perform scoring using interpolation functions.

Usage

1. Clone the repository:

   git clone <https://github.com/moonblume/RNA-Folding-Problem.git>
   

Dependencies

• Python 3
• NumPy
• Pandas
• Matplotlib

Data The PDB file used for analysis is located in the /main directory.

License This project is licensed under the MIT License - see the LICENSE file for details.

Acknowledgments This project was created as part of a research project with Liza Bogdan on RNA structures during my M2 at Paris Saclay in Structural Bio-informatics. Feel free to contribute by submitting issues or pull requests!