Search results

Config validation function checks everything

bugSomething isn't workingSomething isn't working

Status: Open.

#18 In mschecht/cellranger-snakemake;

· danielsarj opened on Feb 26, 2026

TODOs as we head towards V1

Status: Open.

#17 In mschecht/cellranger-snakemake;

· mschecht opened on Feb 20, 2026

show-params should point to stable release html

Status: Open.

#15 In mschecht/cellranger-snakemake;

· mschecht opened on Feb 3, 2026

Init doublet detection tools

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In mschecht/cellranger-snakemake;

· danielsarj opened on Jan 21, 2026

Possible error when connecting Cell Ranger to the conda environment

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#12 In mschecht/cellranger-snakemake;

· danielsarj opened on Jan 14, 2026

Init demuxalot

enhancementNew feature or requestNew feature or request

Status: Open.

#11 In mschecht/cellranger-snakemake;

· mschecht opened on Jan 5, 2026

Add Cell Ranger restart capability for failed jobs

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In mschecht/cellranger-snakemake;

· mschecht opened on Dec 3, 2025

Expand workflow to cover complete 10X → Seurat/Scanpy pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

#7 In mschecht/cellranger-snakemake;

· mschecht opened on Dec 3, 2025