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Get id from file basenames with dir input #45

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nbtm-sh merged 1 commit into from
Sep 26, 2025
Merged

Get id from file basenames with dir input #45

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5 changes: 2 additions & 3 deletions samplesheetutils/binaries/create_samplesheet.py
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Original file line number Diff line number Diff line change
Expand Up @@ -145,9 +145,8 @@ def create_samplesheet():

for i_file_name in file_list:
with open(i_file_name, "r") as fp:
fasta_data = read_fasta(fp, read_data=True, single_line=(not args.monomer))
sample_data.extend(fasta_data)
logger.debug(f"Added sample {i_file_name}, {fasta_data}")
sample_data.append(Sample(os.path.splitext(os.path.basename(fp.name))[0], fp.name, ""))
logger.debug(f"Added sample {i_file_name}, {sample_data[-1]}")

samplesheet_path = args.output_file
logger.debug(f"Sample data array length: {len(sample_data)}")
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