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56 changes: 53 additions & 3 deletions tests/test_integrity_v2.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@
"""

import inspect
import os
import sys
from pathlib import Path

Expand All @@ -20,6 +21,9 @@

from core.gamma import compute_gamma

_RUN_NETWORK_TESTS = os.environ.get("NEOSYNAPTEX_RUN_NETWORK_TESTS") == "1"
_HRV_FLOOR_MIN_SUBJECTS = 3


def _try_import(module_name: str) -> bool:
try:
Expand Down Expand Up @@ -125,14 +129,60 @@ def test_real_data(self):


# ── HRV PhysioNet ──
#
# The substrate is validated on three orthogonal axes:
# 1. test_compute_gamma_recovers_unity_from_synthetic_1f
# Pure math: compute_gamma on a synthetic 1/f PSD (the same VLF band
# the adapter uses) must recover γ ≈ 1.0. No network, no wfdb.
# 2. test_floor_minimum_enforced
# Behaviour: _ensure_loaded raises when fewer than the floor of subjects
# survive. Driven via monkeypatch — no network.
# 3. test_real_data_gamma_in_range
# Integration: wfdb / PhysioNet NSR2DB yield physiological γ.
# Opt-in via NEOSYNAPTEX_RUN_NETWORK_TESTS=1, since PhysioNet is an
# external dependency that flakes; this lane stays off the PR critical
# path and is exercised in a dedicated CI job.


class TestHRV:
@pytest.mark.skipif(not _try_import("wfdb"), reason="wfdb not installed")
def test_gamma_in_range(self):
def test_compute_gamma_recovers_unity_from_synthetic_1f(self) -> None:
from scipy.signal import welch

rng = np.random.default_rng(42)
n = 2**14
fs = 4.0
white = rng.standard_normal(n)
spec = np.fft.rfft(white)
freqs_full = np.fft.rfftfreq(n, d=1.0 / fs)
amp = np.where(freqs_full > 0, freqs_full ** (-0.5), 0.0)
pink = np.fft.irfft(spec * amp, n=n)

f, psd = welch(pink, fs=fs, nperseg=1024)
mask = (f >= 0.003) & (f <= 0.04) & (psd > 0)
r = compute_gamma(f[mask], psd[mask])

assert 0.7 <= r.gamma <= 1.3, f"synthetic 1/f gamma={r.gamma:.3f}"

def test_floor_minimum_enforced(self, monkeypatch: pytest.MonkeyPatch) -> None:
from substrates.hrv_physionet.adapter import HRVPhysioNetAdapter

def _fake_load_below_floor(self_: HRVPhysioNetAdapter) -> None:
self_._loaded = True
self_._subj_gammas = [1.0] * (_HRV_FLOOR_MIN_SUBJECTS - 1)

monkeypatch.setattr(HRVPhysioNetAdapter, "_load", _fake_load_below_floor)
adapter = HRVPhysioNetAdapter(n_subjects=_HRV_FLOOR_MIN_SUBJECTS)
with pytest.raises(RuntimeError, match="Insufficient HRV data"):
adapter._ensure_loaded()

@pytest.mark.skipif(
not (_try_import("wfdb") and _RUN_NETWORK_TESTS),
reason="set NEOSYNAPTEX_RUN_NETWORK_TESTS=1 to exercise PhysioNet",
)
def test_real_data_gamma_in_range(self) -> None:
from substrates.hrv_physionet.adapter import HRVPhysioNetAdapter

adapter = HRVPhysioNetAdapter(n_subjects=3)
adapter = HRVPhysioNetAdapter()
result = adapter.get_gamma_result()
assert 0.5 <= result["gamma"] <= 1.5, f"HRV gamma={result['gamma']}"

Expand Down
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