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feat: treat CDS as a valid feature for GFFs in load_features #1332

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feat: treat CDS as a valid feature for GFFs in load_features #1332

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2 changes: 1 addition & 1 deletion augur/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -153,7 +153,7 @@ def load_features(reference, feature_names=None):
if '.gff' in reference.lower():
#looks for 'gene' and 'gene' as best for TB
from BCBio import GFF
limit_info = dict( gff_type = ['gene', 'source'] )
limit_info = dict( gff_type = ['gene', 'source', 'CDS'] )

with open(reference, encoding='utf-8') as in_handle:
for rec in GFF.parse(in_handle, limit_info=limit_info):
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