refine: Add option to ignore clock filter for certain ids

[victorlin]

Description of proposed changes

Previously, the only way to keep such ids was to change the clock filter, which is not always desirable.

Related issue(s)

Closes #1768

Checklist

• Automated checks pass
• Check if you need to add a changelog message
• Check if you need to add tests
• Check if you need to update docs

[codecov]

Codecov Report

❌ Patch coverage is 75.00000% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 74.37%. Comparing base (3ea7c4a) to head (88cc978).

Files with missing lines	Patch %	Lines
augur/refine.py	75.00%	1 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #1936      +/-   ##
==========================================
+ Coverage   74.26%   74.37%   +0.10%     
==========================================
  Files          82       82              
  Lines        9061     9068       +7     
  Branches     1849     1851       +2     
==========================================
+ Hits         6729     6744      +15     
+ Misses       2025     2021       -4     
+ Partials      307      303       -4     

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