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Install Nextstrain CLI from a standalone archive instead of PyPI #273

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Install Nextstrain CLI from a standalone archive instead of PyPI #273

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13 changes: 9 additions & 4 deletions Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -167,6 +167,12 @@ RUN curl -L https://github.com/shenwei356/seqkit/releases/download/v2.10.1/seqki
# devel/validate-platforms.
ARG CACHE_DATE

# Install our own CLI so builds can do things like `nextstrain deploy`
RUN mkdir -p /nextstrain/cli \
&& curl -fsSL --proto '=https' https://nextstrain.org/cli/download/latest/standalone-"$(/builder-scripts/target-triple)".tar.gz \
| tar xzvf - --no-same-owner --no-same-permissions -C /nextstrain/cli \
&& chmod -R a+rX /nextstrain/cli

# Download Nextclade v3
# Set default Nextclade version to 3
RUN curl -fsSL https://github.com/nextstrain/nextclade/releases/latest/download/nextclade-$(/builder-scripts/target-triple) \
Expand Down Expand Up @@ -280,9 +286,6 @@ ARG CACHE_DATE
# Add helper scripts
COPY builder-scripts/ /builder-scripts/

# Install our own CLI so builds can do things like `nextstrain deploy`
RUN pip3 install nextstrain-cli

# Fauna
WORKDIR /nextstrain/fauna
RUN /builder-scripts/download-repo https://github.com/nextstrain/fauna master . \
Expand Down Expand Up @@ -397,7 +400,6 @@ COPY --from=builder-target-platform \
/usr/local/bin/bio \
/usr/local/bin/envdir \
/usr/local/bin/evofr \
/usr/local/bin/nextstrain \
/usr/local/bin/pathogen-distance \
/usr/local/bin/pathogen-embed \
/usr/local/bin/pathogen-cluster \
Expand All @@ -408,6 +410,9 @@ COPY --from=builder-target-platform \
# Add installed Node libs
COPY --from=builder-build-platform /usr/lib/node_modules/ /usr/lib/node_modules/

# Add globally linked Nextstrain CLI executable.
RUN ln -sv /nextstrain/cli/nextstrain /usr/local/bin/nextstrain

# Add globally linked Auspice script.
#
# This symlink is present in the "builder" image, but using COPY results in the
Expand Down
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