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Add germlinecnvcaller
Add optional targets argument to CNVkit. note: nf-core lint fails due to template mismatches with current dev.
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Working on it: #59 |
Address releases comments
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
Important! Template update for nf-core/tools v3.4.1
test_full
* Template update for nf-core/tools version 3.5.0.dev0 * fix merge conflicts * fix merge conflicts * fix subworkflows install * Update CITATIONS.md * update CHANGELOG
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https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/62dvmr0vViYTm0/v2/tasks |
Co-authored-by: maxulysse <max.u.garcia@gmail.com>
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Nudging this one. Anything you need from the core team? |
Long-read GENS PON
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Need #55
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).