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sgdemux reads the input and writes the output files in the same directory

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#380 In nf-core/demultiplex;

· atrigila opened on Mar 17, 2026

Check results of full-sized test

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#362 In nf-core/demultiplex;

· grst opened on Jan 15, 2026

Add batching in mgikit

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#344 In nf-core/demultiplex;

· UtaHar opened on Oct 11, 2025

·  

1.7.2

Add somalier to identify sample swaps

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#340 In nf-core/demultiplex;

· grst opened on Jul 31, 2025

fqtk doesn't work on AWS batch

bugSomething isn't workingSomething isn't working

Status: Open.

#338 In nf-core/demultiplex;

· SPPearce opened on Jul 18, 2025

Detected samplesheet adapters being passed through the pipeline to fastp for trimming

Status: Open.

Enhancement

#318 In nf-core/demultiplex;

· edmundmiller opened on Mar 11, 2025

“--detect_adapter_for_pe” is hardcoded in fastp module

Status: Open.

Bug

#317 In nf-core/demultiplex;

· edmundmiller opened on Mar 11, 2025

With Illumina instruments, copy RunInfo.xml along InterOp to the output directory even when CheckQC is disabled

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#309 In nf-core/demultiplex;

· lbeltrame opened on Feb 5, 2025

Singularity Illegal instructions

Status: Open.

#303 In nf-core/demultiplex;

· edmundmiller opened on Dec 13, 2024

Update the citation tools

Status: Open.

#146 In nf-core/demultiplex;

· edmundmiller opened on Oct 17, 2023

Update samplesheet in usage

Status: Open.

#139 In nf-core/demultiplex;

· edmundmiller opened on Aug 23, 2023

Clean up samplesheet reading

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#102 In nf-core/demultiplex;

· edmundmiller opened on Mar 15, 2023