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Update tximeta/tximport module to fix sample name mangling #1623

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Merged
merged 3 commits into from
Nov 25, 2025
+51 −31
Merged

Update tximeta/tximport module to fix sample name mangling #1623

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461ab94
Update tximeta/tximport module to fix sample name mangling
pinin4fjords Nov 14, 2025
6f4518c
Update CHANGELOG.md
pinin4fjords Nov 14, 2025
fef8aa4
Merge branch 'dev' into fix_r_checknames_from_dev
pinin4fjords Nov 25, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -17,6 +17,7 @@ Special thanks to the following for their contributions to the release:
- [PR #1608](https://github.com/nf-core/rnaseq/pull/1608) - Bump version after release 3.21.0
- [PR #1618](https://github.com/nf-core/rnaseq/pull/1618) - Fix CI: Ensure confirm-pass job runs for markdown-only PRs
- [PR #1617](https://github.com/nf-core/rnaseq/pull/1617) - Update bbmap/bbsplit module
- [PR #1622](https://github.com/nf-core/rnaseq/pull/1622) - Update tximeta/tximport module to fix sample name mangling
- [PR #1620](https://github.com/nf-core/rnaseq/pull/1620) - Fix bigwig strand labeling for reverse-stranded libraries ([#1591](https://github.com/nf-core/rnaseq/issues/1591))
- [PR #1621](https://github.com/nf-core/rnaseq/pull/1621) - Optimize qualimap performance with multi-threaded name sorting

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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -269,7 +269,7 @@
},
"tximeta/tximport": {
"branch": "master",
"git_sha": "1f008221e451e7a4738226c49e69aaa2eb731369",
"git_sha": "d205ebc03abc530a984d844ab57373f566967ac8",
"installed_by": ["modules", "quantify_pseudo_alignment"]
},
"ucsc/bedclip": {
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73 changes: 46 additions & 27 deletions modules/nf-core/tximeta/tximport/meta.yml
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6 changes: 3 additions & 3 deletions modules/nf-core/tximeta/tximport/templates/tximport.r
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