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@tgelafr-pfzr tgelafr-pfzr commented Nov 18, 2025

Update to cellranger v10.0.0

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

@tgelafr-pfzr tgelafr-pfzr changed the base branch from master to dev November 18, 2025 20:01
@nf-core nf-core deleted a comment from github-actions bot Nov 18, 2025
@tgelafr-pfzr tgelafr-pfzr marked this pull request as ready for review November 19, 2025 13:31
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.4.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@tgelafr-pfzr tgelafr-pfzr force-pushed the update/cellranger-v10.0.0 branch from 1aadc95 to 760eea7 Compare November 19, 2025 15:15
@tgelafr-pfzr tgelafr-pfzr marked this pull request as draft November 19, 2025 16:00
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