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Fix multiqc_title param missing --title flag #114

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Merged
khersameesh24 merged 1 commit into from
Jan 25, 2026
Merged

Fix multiqc_title param missing --title flag #114

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4 changes: 2 additions & 2 deletions conf/modules.config
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Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ process {
}

withName: MULTIQC_PRE_XR_RUN {
ext.args = { params.multiqc_title ? "--title \"${params.multiqc_title}\"" : "MultiQC Pre Xeniumranger import-segmentation Run" }
ext.args = { params.multiqc_title ? "--title \"${params.multiqc_title}\"" : "--title \"MultiQC Pre Xeniumranger import-segmentation Run\"" }
publishDir = [
path: { "${params.outdir}/${params.mode}/multiqc/raw_bundle" },
mode: params.publish_dir_mode,
Expand All @@ -39,7 +39,7 @@ process {
}

withName: MULTIQC_POST_XR_RUN {
ext.args = { params.multiqc_title ? "--title \"${params.multiqc_title}\"" : "MultiQC Post Xeniumranger import-segmentation Run" }
ext.args = { params.multiqc_title ? "--title \"${params.multiqc_title}\"" : "--title \"MultiQC Post Xeniumranger import-segmentation Run\"" }
publishDir = [
path: { "${params.outdir}/${params.mode}/multiqc/redefined_bundle" },
mode: params.publish_dir_mode,
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