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32 changes: 32 additions & 0 deletions README.md
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```

## Test Dataset Overview


- Source: ENCODE Mouse Development Matrix

- DOI: https://doi.org/10.1038/nature11247

- Tissue: Kidney

- Stage: Postnatal Day 0 (P0)

- Replicate: 1

- Marks/Assays: H3K4me3 (ChIP-seq), H3K36me3 (ChIP-seq), WGBS

- Files:
- https://www.encodeproject.org/files/ENCFF824RZT/@@download/ENCFF824RZT.bam -> H3K4me3
- https://www.encodeproject.org/files/ENCFF980SRC/@@download/ENCFF980SRC.bam -> H3K36me3
- https://www.encodeproject.org/files/ENCFF847ROX/@@download/ENCFF847ROX.bed.gz -> WGBS

```bash
# 1. Subset to chr12
samtools view -b H3K4me3_KIDNEY_MOUSE_P0.bam chr12 > H3K4me3_KIDNEY_MOUSE_P0_chr12.bam
zcat WGBS_KIDNEY_MOUSE_P0.bed.gz | awk '$1 == "chr12"' | gzip > WGBS_KIDNEY_MOUSE_P0_chr12.bed.gz

# 2. Downsample to specific 500kb region
samtools view -h -b H3K4me3_KIDNEY_MOUSE_P0_chr12.bam "chr12:10000000-10500000" > small_H3K4me3.bam
samtools view -h -b H3K36me3_KIDNEY_MOUSE_P0_chr12.bam "chr12:10000000-10500000" > small_H3K36me3.bam
zcat WGBS_KIDNEY_MOUSE_P0_chr12.bed.gz | awk '$1=="chr12" && $2>=10000000 && $3<=10500000' | gzip > small_WGBS.bed.gz
```


## Support

For further information or help, don't hesitate to get in touch on our [Slack organisation](https://nf-co.re/join/slack) (a tool for instant messaging).
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