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[ENH] Change ownership #13

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[ENH] Change ownership #13

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0c2d33d
Update Dockerfile
arnaudbore May 29, 2025
a39c056
update path to new organization
arnaudbore Nov 7, 2025
ce75d5a
merge main
arnaudbore Nov 7, 2025
349d797
Merge branch 'main' into change_ownership
arnaudbore Nov 7, 2025
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6 changes: 3 additions & 3 deletions .devcontainer/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -39,10 +39,10 @@ ENV NXF_EDGE=0
ENV NXF_VER=24.10.4
ENV NXF_HOME=/workspaces/.nextflow

ENV NFNEURO_RAW_REPOSITORY="https://raw.githubusercontent.com/scilus/nf-neuro/main"
ENV NFCORE_MODULES_GIT_REMOTE=https://github.com/scilus/nf-neuro.git
ENV NFNEURO_RAW_REPOSITORY="https://raw.githubusercontent.com/nf-neuro/modules/main"
ENV NFCORE_MODULES_GIT_REMOTE=https://github.com/nf-neuro/modules.git
ENV NFCORE_MODULES_BRANCH=main
ENV NFCORE_SUBWORKFLOWS_GIT_REMOTE=https://github.com/scilus/nf-neuro.git
ENV NFCORE_SUBWORKFLOWS_GIT_REMOTE=https://github.com/nf-neuro/modules.git
ENV NFCORE_SUBWORKFLOWS_BRANCH=main

# Install conda
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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -2,7 +2,7 @@
"name": "",
"homePage": "",
"repos": {
"https://github.com/scilus/nf-neuro.git": {
"https://github.com/nf-neuro/modules.git": {
"modules": {
"nf-neuro": {
"reconst/dtimetrics": {
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -12,7 +12,7 @@ profiles {
}

manifest {
name = 'scilus/nf-neuro-tutorial'
name = 'nf-neuro/tutorial'
description = """nf-neuro-tutorial is a Nextflow pipeline for processing neuroimaging data."""
version = '0.1dev'
}
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2 changes: 1 addition & 1 deletion nf-test.config
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Expand Up @@ -11,7 +11,7 @@ config {
ignore ".venv/**/*.nf*"

plugins {
repository "https://raw.githubusercontent.com/scilus/nf-neuro/main/tests/plugins.json"
repository "https://raw.githubusercontent.com/nf-neuro/modules/main/tests/plugins.json"

load "nft-nifti@0.0.1"
}
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6 changes: 3 additions & 3 deletions tests/plugins.json
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Expand Up @@ -2,15 +2,15 @@
{
"id": "nft-nifti",
"latest": "0.0.1",
"url": "https://github.com/scilus/nft-nifti",
"github": "scilus/nft-nifti",
"url": "https://github.com/nf-neuro/nft-nifti",
"github": "nf-neuro/nft-nifti",
"description": "Provides support for NIFTI files.",
"author": "Arnaud Boré and Alex V Caron",
"keywords": [],
"releases": [
{
"version": "0.0.1",
"url": "https://github.com/scilus/nft-nifti/releases/download/0.0.1/nft-nifti-0.0.1.jar"
"url": "https://github.com/nf-neuro/nft-nifti/releases/download/0.0.1/nft-nifti-0.0.1.jar"
}
]
}
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