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Revert "broken symlink as an input the ShellTask" #4

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Revert "broken symlink as an input the ShellTask" #4

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f3793b5
Merge pull request #3 from djarecka/nicolocin-skip_symlink_hash
nicolocin Aug 19, 2020
76b144c
Revert "broken symlink as an input the ShellTask"
nicolocin Aug 19, 2020
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50 changes: 0 additions & 50 deletions pydra/engine/tests/test_shelltask.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1153,56 +1153,6 @@ def test_shell_cmd_inputspec_9(plugin, results_function, tmpdir):
assert res.output.stdout == "hello from boston"


def test_shell_cmd_inputspec_10_err(tmpdir):
""" checking if the proper error is raised when broken symlink is provided
as a input field with File as a type
"""

file_1 = tmpdir.join("file_1.txt")
with open(file_1, "w") as f:
f.write("hello")
file_2 = tmpdir.join("file_2.txt")

# creating symlink and removing the original file
os.symlink(file_1, file_2)
os.remove(file_1)

cmd_exec = "cat"

my_input_spec = SpecInfo(
name="Input",
fields=[
(
"files",
attr.ib(
type=File,
metadata={
"position": 1,
"argstr": "",
"help_string": "a file",
"mandatory": True,
},
),
)
],
bases=(ShellSpec,),
)

shelly = ShellCommandTask(
name="shelly", executable=cmd_exec, files=file_2, input_spec=my_input_spec
)

# checking if the broken symlink error is raised when checksum is calculated
with pytest.raises(FileNotFoundError) as e:
checksum = shelly.checksum
assert "Broken symlink" in str(e.value)

# checking if the broken symlink error is raised when the task is run
with pytest.raises(FileNotFoundError) as e:
res = shelly()
assert "Broken symlink" in str(e.value)


@pytest.mark.parametrize("results_function", [result_no_submitter, result_submitter])
def test_shell_cmd_inputspec_copyfile_1(plugin, results_function, tmpdir):
""" shelltask changes a file in place,
Expand Down