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Made config parameter less strict #146

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Merged
opain merged 1 commit into from
Jun 28, 2025
Merged

Made config parameter less strict #146

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5 changes: 4 additions & 1 deletion pipeline/rules/dependencies.smk
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Original file line number Diff line number Diff line change
Expand Up @@ -101,12 +101,15 @@ def check_config_parameters(config):
missing_params = []
for param in required_params:
val = config.get(param)
if val is None or (param == "config_file" and val == "NA"):
if val is None:
missing_params.append(param)

if missing_params:
print("Error: Missing parameters in user-specified and default config files:", missing_params)
sys.exit(1)

if config.get("config_file") == "NA":
print("Warning: No user specified config file was provided.")

# Check the config
check_config_parameters(config)
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