open-veanu · chriguBERTO · Apr 25, 2025 · Apr 25, 2025
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -22,7 +22,7 @@ jobs:
     - name: Python Vulnerability Check
       #bandit exits by defaul with status 1 if a vulerability was found. Status unequal to 0 lead to a github action failure
       run: |
-        poetry run bandit -r vianu
+        poetry run bandit -r veanu
 
     - name: Lint with Ruff
       run: |
@@ -34,4 +34,4 @@ jobs:
 
     - name: Run Unit Tests
       run: |
-        poetry run pytest --cov=vianu --cov-report=html --cov-report=xml tests/tests-*/* -s
+        poetry run pytest --cov=veanu --cov-report=html --cov-report=xml tests/tests-*/* -s
diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md
@@ -18,7 +18,7 @@ We are committed to creating a friendly and welcoming environment for everyone,
 
 ## Reporting Issues
 
-If you experience or witness unacceptable behavior, please report it by contacting the project maintainers at [hello@vianu.org]. All reports will be handled confidentially.
+If you experience or witness unacceptable behavior, please report it by contacting the project maintainers at [hello@veanu.ch]. All reports will be handled confidentially.
 
 ## Consequences
 

diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
@@ -1,19 +1,19 @@
-# Contributing to Vianu
+# Contributing to open-veanu/veanu
 
-First, let us thank you for considering contributing to Vianu! Your involvement is vital to the project's success.
+First, let us thank you for considering contributing to open-veanu/veanu! Your involvement is vital to the project's success.
 
 ## How Can You Contribute?
 
-- **Reporting Bugs**: If you encounter any issues, please [open an issue](https://github.com/smc40/vianu/issues) with detailed information.
-- **Suggesting Enhancements**: Have an idea to improve Vianu? [Submit a feature request](https://github.com/smc40/vianu/issues) outlining your suggestion.
+- **Reporting Bugs**: If you encounter any issues, please [open an issue](https://github.com/open-veanu/veanu/issues) with detailed information.
+- **Suggesting Enhancements**: Have an idea to improve veanu? [Submit a feature request](https://github.com/open-veanu/veanu/issues) outlining your suggestion.
 - **Submitting Pull Requests**: Ready to code? Follow the steps below to submit your contributions.
 
 ## Getting Started
 
-1. **Clone the Repository**: Clone the Vianu repository to your local machine:
+1. **Clone the Repository**: Clone the veanu repository to your local machine:
    ```bash
-   git clone https://github.com/smc40/vianu.git
-   cd vianu
+   git clone https://github.com/open-veanu/veanu.git
+   cd veanu
    ```
 
 2. **Create a Branch**: Start by creating a new branch for your feature or bugfix:
@@ -45,7 +45,7 @@ First, let us thank you for considering contributing to Vianu! Your involvement
    git push origin feature/your-feature-name
    ```
 
-8. **Open a Pull Request**: Go to the Vianu repository on GitHub and open a pull request from your branch.
+8. **Open a Pull Request**: Go to the open-veanu/veanu repository on GitHub and open a pull request from your branch.
 
 ## Code Style
 

diff --git a/LICENSE b/LICENSE
@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2024 vianu
+Copyright (c) 2025 veanu
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

diff --git a/README.md b/README.md
@@ -1,36 +1,36 @@
 <p align="center">
-    <img src="https://avatars.githubusercontent.com/u/189356226?s=400&u=4bc88c9f31bc573f84d4222461c520e19c1c97a4&v=4" alt="vianu Logo" width="150" height="150" />
-    <h3 align="center">vianu</h3>
+    <img src="https://avatars.githubusercontent.com/u/189356226?s=400&u=4bc88c9f31bc573f84d4222461c520e19c1c97a4&v=4" alt="veanu Logo" width="150" height="150" />
+    <h3 align="center">veanu</h3>
     <p align="center">Together we are building an Open Source Community for Life Sciences.</p>
     <p align="center">
-        <a href="https://badge.fury.io/py/vianu"><img alt="PyPI version" src="https://badge.fury.io/py/vianu.svg?icon=si%3Apython"></a>
+        <a href="https://badge.fury.io/py/veanu"><img alt="PyPI version" src="https://badge.fury.io/py/veanu.svg?icon=si%3Apython"></a>
     </p>
 </p>
 
 ---
 
-Vianu is a Python package designed for developers working in the **life sciences and healthcare** sectors. It provides access to a variety of tools and workflows, allowing users to quickly build, validate, and deploy data-driven applications.
+veanu is a Python package designed for developers working in the **life sciences and healthcare** sectors. It provides access to a variety of tools and workflows, allowing users to quickly build, validate, and deploy data-driven applications.
 
 ## Available Tools
 
 - **Lasa**: A tool for phonetic comparison of novel drug names with authorized ones from different locations.
 - **FraudCrawler**: A data ingestion and transformation pipeline for real-world healthcare data.
 - **SpoCK**: A tool to search public websites for spotting adverse drug reactions
-- **DrugSafetyCompare**: A tool to search for published drug labels and compare their safety profiles. [See in action](https://huggingface.co/spaces/vianu/drugsafetycompare)
+- **DrugSafetyCompare**: A tool to search for published drug labels and compare their safety profiles. [See in action](https://huggingface.co/spaces/veanu/drugsafetycompare)
 
 ## Installation
 
-To install Vianu, use the following command:
+To install veanu, use the following command:
 
 ```bash
-pip install vianu
+pip install veanu
 ```
 
-Alternatively, you can install vianu from source:
+Alternatively, you can install veanu from source:
 
 ```bash
-git clone https://github.com/smc40/vianu.git
-cd vianu
+git clone https://github.com/open-veanu/veanu.git
+cd veanu
 poetry install
 poetry shell
 ```
@@ -44,24 +44,24 @@ TBD
 #### Launch a Demo Pipeline
 
 ```bash
-cd vianu/lasa
+cd veanu/lasa
 poetry install
 poetry shell
-python -m vianu.tools.tici.launch_demo_pipeline
+python -m veanu.tools.tici.launch_demo_pipeline
 ```
 
 ### FraudCrawler
 
 #### Launch a Demo App
 
 ```bash
-python vianu/fraudcrawler/launch_demo_app.py
+python veanu/fraudcrawler/launch_demo_app.py
 ```
 
 #### Launch a Demo Pipeline
 
 ```bash
-python -m vianu.fraudcrawler.launch_demo_pipeline
+python -m veanu.fraudcrawler.launch_demo_pipeline
 ```
 
 
@@ -74,11 +74,11 @@ To lauch the demo app do the following:
 ```bash
 poetry install
 poetry shell
-python vianu/tools/drugsafetycompare/launch_demo_app_count.py
+python veanu/tools/drugsafetycompare/launch_demo_app_count.py
 ```
 Or simply launch the starter-script:
 ```bash
-vianu_drugsafetycompare_app
+veanu_drugsafetycompare_app
 
 ```
 
@@ -87,7 +87,7 @@ vianu_drugsafetycompare_app
 ```bash
 poetry install
 poetry shell
-python -m vianu.drugsafetycompare.launch_demo_pipeline
+python -m veanu.drugsafetycompare.launch_demo_pipeline
 ```
 
 
@@ -96,13 +96,13 @@ python -m vianu.drugsafetycompare.launch_demo_pipeline
 #### Launch a Demo App
 
 ```bash
-python vianu/spock/launch_demo_app.py
+python veanu/spock/launch_demo_app.py
 ```
 
 #### Launch a Demo Pipeline
 
 ```bash
-python -m vianu.spock.launch_demo_pipeline
+python -m veanu.spock.launch_demo_pipeline
 ```
 
 
@@ -129,7 +129,7 @@ This project is licensed under the MIT License.
 
 ## Feedback and Support
 
-For any issues or feature requests, please use the [GitHub Issues](https://github.com/smc40/vianu/issues) page.
+For any issues or feature requests, please use the [GitHub Issues](https://github.com/open-veanu/veanu/issues) page.
 
 ## Acknowledgments
 

diff --git a/citation.cff b/citation.cff
@@ -1,5 +1,5 @@
 cff-version: 1.2.0
-title: 'Vianu'
+title: 'veanu'
 message: >-
   If you use this software, please cite it using the
   metadata from this file.
@@ -9,12 +9,12 @@ authors:
     family-names: Perez Gonzalez
   - given-names: Alexander
     family-names: Horst
-repository-code: 'https://github.com/smc40/vianu'
-abstract: "Vianu enables developers to access tools applicable to life sciences and healthcare."
+repository-code: 'https://github.com/open-veanu/veanu'
+abstract: "veanu enables developers to access tools applicable to life sciences and healthcare."
 keywords:
   - healthcare
   - goverment
   - pytorch
   - tensorflow
 license: unclear
-version: 0.0.0
+version: 0.1.0
diff --git a/docs/_config.yml b/docs/_config.yml
@@ -1,10 +1,10 @@
-title: vianu
+title: veanu
 description: an open-source platform for the life sciences
 theme: just-the-docs
 
-url: https://open-vianu.github.io/vianu
+url: https://open-veanu.github.io/veanu
 
-# These are individual configurations to vianu
+# These are individual configurations to veanu
 logo: "/assets/images/pingu-logo.png"
 favicon_ico: "/assets/images/favicon-pingu.ico"
 search_enabled: true

diff --git a/docs/drugsafetycompare.md b/docs/drugsafetycompare.md
@@ -94,16 +94,16 @@ Before you begin, ensure you have the following installed:
 1. **Download package**
 
    ```bash
-   pip install vianu
+   pip install veanu
    ```
 2. **Launch app** (with starterscript)
     ```bash
-    vianu_drugsafetycompare_app
+    veanu_drugsafetycompare_app
     ```
     The application will launch and can be accessed via your web browser at `http://127.0.0.1:7860/?__theme=light`.
 3. **Use Pipeline to Extract Drug Labels**: In Python you can use the following:
     ```python
-        from vianu.drugsafetycompare.src.germany import GermanDrugInfoExtractor
+        from veanu.drugsafetycompare.src.germany import GermanDrugInfoExtractor
         extractor = GermanDrugInfoExtractor()
         try:
             # Define the drug name

diff --git a/docs/fraudcrawler.md b/docs/fraudcrawler.md
@@ -10,7 +10,7 @@ The `FraudCrawler` tool collects URLs suspicious of illegal activity based on me
 
 ## Usage
 ```python
-from vianu.fraudcrawler.src.client import FraudcrawlerClient
+from veanu.fraudcrawler.src.client import FraudcrawlerClient
 
 fc = FraudcrawlerClient()
 fc.serpapi_token = "your_serpapi_token"

diff --git a/docs/index.md b/docs/index.md
@@ -4,13 +4,13 @@ layout: home
 nav_order: 1
 ---
 
-# Welcome to VIANU!
+# Welcome to open-veanu/veanu!
 
-# Vianu is a package meant to provide support to devs in the life sciences
+# veanu is a package meant to provide support to devs in the life sciences
 
 [Get Started](#getting-started){: .btn .btn-purple }
 
-[Vianu] is a *Python package* designed for developers working in the life sciences and healthcare sectors. 
+[veanu] is a *Python package* designed for developers working in the life sciences and healthcare sectors. 
 It provides access to a variety of tools and workflows, allowing users to quickly build, validate, and deploy 
 data-driven applications.
 
@@ -32,22 +32,9 @@ This is how you install all of our cool ninja moves
 
 ## Quick Installation
 ```bash
-pip install vianu==0.1.2
+pip install veanu
 ```
 
-### Example usage
+go ahead and `have fun` with this repository!
 
-```python
-from vianu.fraudcrawler.src.client import FraudcrawlerClient
-
-fc = FraudcrawlerClient()
-fc.serpapi_token = "your_token"
-fc.zyte_api_key = "your_key"
-
-df = fc.search("sildenafil", num_results=5, location="Switzerland")
-print(df)
-```
-
-Other than that, go ahead and `have fun` with this repository!
-
-[Vianu]: https://github.com/open-vianu/vianu
+[veanu]: https://github.com/open-veanu/veanu
diff --git a/docs/spock.md b/docs/spock.md
@@ -39,8 +39,8 @@ docker exec -it ollama ollama pull llama3.2
 
 #### Python environment
 ```bash
-git clone https://github.com/open-vianu/vianu.git
-cd vianu
+git clone https://github.com/open-veanu/veanu.git
+cd veanu
 poetry install
 poetry shell
 ```
@@ -54,17 +54,17 @@ or alternatively set the corresponding environment variable through the UI.
 
 ### Run demo pipeline
 ```bash
-python vianu/spock/launch_demo_pipeline.py
+python veanu/spock/launch_demo_pipeline.py
 ```
 
 ### Run demo app
 ```bash
-python vianu/spock/launch_demo_app.py
+python veanu/spock/launch_demo_app.py
 ```
 
 ### CLI
 ```bash
-python -m vianu.spock --term dafalgan --model llama --data-path "/tmp/spock" --data-file "spock_data" --log-level DEBUG
+python -m veanu.spock --term dafalgan --model llama --data-path "/tmp/spock" --data-file "spock_data" --log-level DEBUG
 ```
 
 ### Disclaimer

diff --git a/docs/toxicologygan.md b/docs/toxicologygan.md
@@ -6,7 +6,7 @@ nav_order: 3
 
 # Welcome to ToxicologyGAN
 
-**ToxicologyGAN** is an out-of-the-box tool within the vianu package to help users facilitate the training of a GAN
+**ToxicologyGAN** is an out-of-the-box tool within the open-veanu/veanu package to help users facilitate the training of a GAN
 network in the context of simulating ...
 
 [Skip to Installation](#installation-guide){: .btn .btn-purple }
@@ -22,7 +22,7 @@ to generate new data points.
 
 Based on the work of [Chen et al. (Nature Communications, 2023)](https://www.nature.com/articles/s41467-023-42933-9), 
 we implemented a simpler version of the code to make it more accessible and easy to use. Once having the correct input 
-data, the training of the network is easily performed with the implementation in vianu.
+data, the training of the network is easily performed with the implementation in veanu.
 
 
 ### Prerequisites
@@ -35,7 +35,7 @@ data, the training of the network is easily performed with the implementation in
 1. **Download package**
 
    ```bash
-   pip install vianu
+   pip install veanu
    ```
 
 2. **Use Pipeline to train GAN network and generate new data points**: In Python you can use the following:

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,13 +1,13 @@
 [tool.poetry]
-name = "vianu"
+name = "veanu"
 version = "0.1.3"
-description = "Vianu enables developers to access tools applicable to life sciences and healthcare."
+description = "veanu enables developers to access tools applicable to life sciences and healthcare."
 authors = [
-    "Nicolas Perez Gonzalez <hello@vianu.org>",
-    "Alexander Horst <hello@vianu.org>",
-    "Chriguberto Jäggli <hello@vianu.org>"
+    "Domingo Bertus <hello@veanu.ch>",
+    "NicoBerto <hello@veanu.ch>",
+    "Penguin Berthold <hello@veanu.ch>",
 ]
-repository = "https://github.com/smc40/vianu"
+repository = "https://github.com/open-veanu/veanu"
 license = "MIT"
 keywords = ["healthcare", "government", "opensource", "data science"]
 readme = "README.md"
@@ -45,8 +45,7 @@ pdfminer = "^20191125"
 google-search-results = "^2.4.2"
 
 [tool.poetry.scripts]
-vianu_fraudcrawler_app = "vianu.fraudcrawler.launch_demo_app:main"
-vianu_drugsafetycompare_app = "vianu.drugsafetycompare.launch_demo_app:main"
+veanu_drugsafetycompare_app = "veanu.drugsafetycompare.launch_demo_app:main"
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]