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    25 repositories

    • HABSHD

      Public
      Analyzing associations of cross-ancestry PRS models in HABSHD
      R
      •1•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • MR

      Public
      HTML
      •
      MIT License
      •5•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • PRS-CS-Auto

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • CRS-analysis

      Public
      Benchmarking four dementia clinical risk score, mCAIDE, WHICAP, LIBRA, and CogDRisk, against diagnostic and ADRD endophenotypic outcomes in the Health & Aging B…
      MIT License
      •1•0•0•0•Updated Mar 25, 2026Mar 25, 2026

    • CAIDE_APOE

      Public
      Investigating the effect of CAIDE and APOE on AD in diverse populations
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 13, 2026Feb 13, 2026

    • Brian-Estimating-Causality-mtDNAcn-on-Alzheimer

      Public
      Mock Mendelian Randomization/ mitochondrial copy number on AD
      1•0•0•1•Updated Feb 2, 2026Feb 2, 2026

    • AFRPRS

      Public
      AD-PRS benchmarking in the ADSP + secondary analysis in the ADSP and the HABSHD
      Shell
      •1•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • snakemake-executor-plugin-sge-wynton

      Public
      This package provides executor plugin for snakemake to work on sge
      Python
      •
      Other
      •0•1•0•4•Updated Sep 5, 2025Sep 5, 2025

    • mtDNAhtz_CARDIA

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jun 15, 2025Jun 15, 2025

    • GWASampleFiltering

      Public
      Post imputation QC and processing of Michigan Imputation Server Jobs
      Python
      •1•1•0•0•Updated May 14, 2025May 14, 2025

    • genetic_correlations

      Public
      Snakemake workflow for estimating genetic correlations between traits
      R
      •
      MIT License
      •2•2•0•0•Updated Mar 12, 2025Mar 12, 2025

    • docker_R_MungeSumstats

      Public
      Creating docker image for MungeSumstats
      Dockerfile
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • Lab-Handbook

      Public
      AndrewsLab Handbook
      MIT License
      •3•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • imputePipeline

      Public
      A Snakemake pipeline to prepare binary PLINK files for the Michigan Imputation Server.
      Python
      •3•1•0•0•Updated Feb 7, 2025Feb 7, 2025

    • Snoring-AD-MR

      Public
      Estimating the causal effect of Snoring
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • IntroGeneticEpi

      Public
      Introduction to Genetic Epidemiology
      TeX
      •
      MIT License
      •0•0•0•0•Updated May 13, 2024May 13, 2024

    • MR-tutorial

      Public
      Tutorial for running Mendelian Randomization analysis using R
      JavaScript
      •
      MIT License
      •4•35•1•0•Updated Apr 29, 2024Apr 29, 2024

    • docker_R_DNAm

      Public
      Docker container for running DNAm analyses in R
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • qc-ancestry-impute-qc

      Public
      An integrated pipeline to do initial genotype QC, impute by ancestry, combine results and do remaining QC on microarray genotypes
      Python
      •2•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • docker_ldsc

      Public
      Docker image for LDSC
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Sep 16, 2023Sep 16, 2023

    • sandbox

      Public
      Python
      •1•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • sge-wynton

      Public
      Snakemake profile for sge-wynton
      Python
      •1•2•0•0•Updated Aug 16, 2023Aug 16, 2023

    • COVID-Tinnitus-2SMR

      Public
      R scripts for a project conducting two sample Mendelian randomization on COVID-19 and tinnitus.
      R
      •
      MIT License
      •0•5•0•0•Updated Aug 8, 2023Aug 8, 2023

    • COVID19_heritability

      Public
      Heritability estimates for COVID-19 HGI phenotypes
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • postImpute

      Public
      Post imputation QC and processing of Michigan Imputation Server Jobs
      Python
      •3•0•0•0•Updated Mar 20, 2023Mar 20, 2023
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