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    • BASH scripts to download required files for the psbadmin and pdbmap code
      Shell
      0020Updated Feb 23, 2026Feb 23, 2026
    • pdbmap

      Public
      Perl
      12130Updated Jan 13, 2026Jan 13, 2026
    • Capra Lab website
      HTML
      MIT License
      160000Updated Aug 6, 2025Aug 6, 2025
    • Jupyter Notebook
      0000Updated Jan 9, 2025Jan 9, 2025
    • An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)
      TeX
      MIT License
      22200Updated Nov 13, 2023Nov 13, 2023
    • resources

      Public
      This directory includes useful tutorials and resources for working in the Capra lab.
      Jupyter Notebook
      0000Updated Jan 5, 2023Jan 5, 2023
    • cosmis

      Public
      COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3…
      Python
      GNU General Public License v3.0
      51600Updated Nov 11, 2022Nov 11, 2022
    • PSB

      Public
      Personalized Structural Biology approach for rare coding variant interpretation, based on protein structural context and MD simulations.
      Shell
      1000Updated Jun 23, 2022Jun 23, 2022
    • Dash based web application for interactive use of the COSMIS framework
      Python
      0000Updated Sep 28, 2021Sep 28, 2021
    • DiGePred

      Public
      Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has …
      Python
      2800Updated Aug 19, 2021Aug 19, 2021
    • VIPUR

      Public
      A method for identifying deleterious protein variation.
      C++
      5000Updated Feb 23, 2016Feb 23, 2016
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