Repositories list

• pipeline_download_scripts

  Public
  BASH scripts to download required files for the psbadmin and pdbmap code

  Shell

  •0•0•2•0•Updated Feb 23, 2026Feb 23, 2026

• pdbmap

  Public
  Perl

  •1•2•13•0•Updated Jan 13, 2026Jan 13, 2026

• CapraLab.github.io

  Public
  Capra Lab website

  HTML

  •

  MIT License

  •160•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• NEFL_Haplotype_Editing

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• lab-manuscript-template

  Public
  An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)

  TeX

  •

  MIT License

  •2•22•0•0•Updated Nov 13, 2023Nov 13, 2023

• resources

  Public
  This directory includes useful tutorials and resources for working in the Capra lab.

  Jupyter Notebook

  •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• cosmis

  Public
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3…

  Python

  •

  GNU General Public License v3.0

  •5•16•0•0•Updated Nov 11, 2022Nov 11, 2022

• PSB

  Public
  Personalized Structural Biology approach for rare coding variant interpretation, based on protein structural context and MD simulations.

  Shell

  •1•0•0•0•Updated Jun 23, 2022Jun 23, 2022

• cosmis_app

  Public
  Dash based web application for interactive use of the COSMIS framework

  Python

  •0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• DiGePred

  Public
  Random Forest classifier designed to predict pairs of human genes capable to causing a digenic disease when carrying rare variants simultaneously. DiGePred has …

  Python

  •2•8•0•0•Updated Aug 19, 2021Aug 19, 2021

• VIPUR

  Public
  A method for identifying deleterious protein variation.

  C++

  •5•0•0•0•Updated Feb 23, 2016Feb 23, 2016