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    23 repositories

    • MARL-PTM

      Public
      Multi-Agent Reinforcement Learning (MARL) for Predicting Post-Translational Modifications (PTM) Using Protein, Pathway and Gene Expression Networks.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 20, 2025May 20, 2025

    • MultiAgent-OS-CVD

      Public
      Context-Aware Multi-Agent AI System to Explore the Oxidative Stress (OS) in Cardiovascular Diseases (CVD)
      Python
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • IonChannel

      Public
      Ca regulating Ion Channels and Oxidative Stress as a Potential Link for the understanding of Cardiovascular Diseases: A data science approach.
      HTML
      •
      MIT License
      •0•1•0•0•Updated Nov 20, 2024Nov 20, 2024

    • uniprotKG

      Public
      Exploration of Post-translational modifications (PTMs) through knowledge graph approach
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • caseolap_lift

      Public
      Code associated with the paper, “A knowledge graph approach to elucidate the role of organellar pathways in disease via biomedical reports".
      Python
      •1•2•0•0•Updated Nov 20, 2023Nov 20, 2023

    • AAC

      Public
      AAC KG
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 15, 2023Sep 15, 2023

    • caseolap_statistical_evaluation

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 18, 2023Feb 18, 2023

    • Biomedical-CaseOLAP-PD

      Public
      Summer 2022: A text mining application for PubMed publications. A biomedical application of CaseOLAP with improved entity name filtering, more readable code, an…
      Jupyter Notebook
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • cardiac_proteome_caseolap

      Public
      Defining relationships among functional cardiac subproteomes and heart disease
      Jupyter Notebook
      •0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

    • caseolap

      Public
      CaseOLAP: A cloud computing platform for phrase mining. This consists of downloading, parsing, and indexing of data, text-cube creation, entity count with searc…
      nlptext-miningnlp-machine-learning
      nlptext-miningnlp-machine-learningphrase-extraction
      Python
      •
      MIT License
      •2•7•0•0•Updated May 12, 2022May 12, 2022

    • covid-cvd-knowledgegraph

      Public
      Understanding the Molecular Interface of Heart Disease and COVID-19: A Data Science Approach with Knowledgegraph
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 4, 2022May 4, 2022

    • cvd-sunburst

      Public
      Sunbrust plot of CVD MeSH count. The sunbrust plot is created by implementing d3.js package with the data obtained from MESH to PMID mapping.
      Jupyter Notebook
      •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • covid-cvd

      Public
      Understanding the Molecular Interface of Cardiovascular Disease and COVID-19: A Data Science Approach
      pythontext-miningreactome-pathway
      pythontext-miningreactome-pathwaymolecular-mechanismcovid-19cardiovascular-diseases
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 28, 2021Oct 28, 2021

    • caseolap.github.io

      Public
      CaseOLAP Website [Front line]. This demo website consists of general information about CaseOLAP and it's implementation as well as sample results.
      javascriptcsshtml
      javascriptcsshtmld3js
      HTML
      •1•0•0•1•Updated Aug 2, 2021Aug 2, 2021

    • brrr

      Public
      BRRR - Biomedical Reference Range Resources
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 18, 2020Aug 18, 2020

    • docs

      Public
      Documentation for CaseOLAP platform. This documents provides a demo for sample application.
      pythonmkdocs
      pythonmkdocs
      0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • caseolap-pipelines

      Public
      Demo of pipelines in CaseOLAP platform and sample data. These pipelines consists of downloading, parsing, indexing of data, text-cube creation and search of ent…
      pythonelasticsearchautophrase
      pythonelasticsearchautophrase
      HTML
      •0•2•0•0•Updated Sep 25, 2019Sep 25, 2019

    • mesh2pmid-mapping

      Public
      Demo of MeSH to PMID MApping. This mapping accounts the number of documents associated with specific MESH descriptors. The obtained mapping data are visualized …
      pythonhtmld3js
      pythonhtmld3js
      HTML
      •0•0•0•0•Updated Apr 12, 2019Apr 12, 2019

    • chemicaltree

      Public
      Demo of Chemical and Drugs Tree (MeSH). These trees are visualized implementing D3.js library.
      htmld3js
      htmld3js
      HTML
      •
      Other
      •1•0•0•0•Updated Mar 27, 2019Mar 27, 2019

    • reactom-web-api

      Public
      Implementing Reactom API to visualize Reactom Pathways in web page.
      htmlapijs
      htmlapijs
      HTML
      •0•0•0•0•Updated Jan 24, 2019Jan 24, 2019

    • dataviz

      Public
      Web app to visualization of CaseOLAP Score for entity category association.
      JavaScript
      •0•0•0•0•Updated Sep 14, 2018Sep 14, 2018

    • AutoPhrase

      Public
      AutoPhrase: Automated Phrase Mining from Massive Text Corpora
      C++
      •
      Apache License 2.0
      •271•0•0•0•Updated Jul 17, 2018Jul 17, 2018

    • pubtator

      Public
      Retrieve and process PubTator annotations
      Python
      •
      Other
      •9•0•0•0•Updated Jul 13, 2017Jul 13, 2017
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