Repositories list

• Pipeline-Holoruminant-Meta

  Public
  Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators

  HTML

  •1•0•0•0•Updated Nov 28, 2025Nov 28, 2025

• Metataxonomics_Workshop

  Public
  Data and scripts for CreeveyLab Metataxonomics workshop

  C++

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 1, 2025Jun 1, 2025

• CowPi_workflow_utility

  Public
  Scripts to update and automate CowPi analyses

  Python

  •2•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• Workshop-Genomes-pangenomes

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

• .github

  Public
  0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• clann

  Public

  CreeveyLab/clann’s past year of commit activity
  FORK OF: Clann constructing consensus trees and supertrees from multiple source trees

  C

  •

  GNU General Public License v2.0

  •2•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• fast_triplet_count

  Public
  This tool reads a fasta file (either gzippped or uncompressed) and calculates the frequency of all triplets.

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 7, 2020May 7, 2020