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    101 repositories

    • dnastack-client

      Public
      The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python
      pythonclientworkflow
      pythonclientworkflowpython3omicsga4ghga4gh-wesdnastackga4gh-data-connectga4gh-service-registry
      Python
      •
      Apache License 2.0
      •0•0•3•22•Updated Mar 5, 2026Mar 5, 2026

    • concourse-oci-helm-chart-resource

      Public
      Concourse resource for Helm charts in OCI registries
      Go
      •
      Apache License 2.0
      •1•0•0•10•Updated Mar 4, 2026Mar 4, 2026

    • merge-tfvars

      Public
      Command line tool that merges Terraform .tfvars files as if they were all passed to Terraform separately
      Go
      •
      Mozilla Public License 2.0
      •0•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • platform-interview-exercise

      Public
      0•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • concourse-pipeline-jsonschema

      Public
      A Json Schema for Concourse Pipeline
      Go
      •
      Apache License 2.0
      •3•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • spatial-transcriptomics-wf

      Public
      Repo for testing and developing a common human postmortem-derived brain sequencing (PMDBS) and non-human workflow harmonized across ASAP with human and mouse sp…
      WDL
      •
      Apache License 2.0
      •1•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • pmdbs-bulk-rnaseq-wf

      Public
      Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP with human bulk RNA sequencing data
      WDL
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • wf-common

      Public
      Workflows and tasks reused across harmonized ASAP workflows
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • pmdbs-sc-rnaseq-wf

      Public
      Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP
      Python
      •
      Apache License 2.0
      •4•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • iceberg

      Public
      Apache Iceberg
      Java
      •
      Apache License 2.0
      •3.1k•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • concourse-helm3-resource

      Public
      Concourse resource to deploy Helm v3 charts.
      Shell
      •62•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • temp-test-repo-three

      Public
      0•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • temp-test-repo-two

      Public
      0•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • temp-test-repo-one

      Public
      0•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •50•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • wdl-common

      Public
      Fork of PacBio's wdl-common repo
      WDL
      •
      BSD 3-Clause Clear License
      •15•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • aws-healthomics-engine-installer

      Public
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•3•0•1•Updated Mar 3, 2026Mar 3, 2026

    • sentieon-amazon-omics

      Public
      Sentieon pipelines for Amazon Omics
      WDL
      •
      BSD 2-Clause "Simplified" License
      •4•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • wdl-mothur

      Public
      wdl-mothur is a repository featuring a Workflow Description Language (WDL) pipeline for seamless processing of 16S rRNA data using Mothur, enabling reproducible…
      WDL
      •1•0•1•1•Updated Mar 3, 2026Mar 3, 2026

    • Harmony-RNA-Workflow

      Public
      Workflow for Single-cell RNA Measurements using Seurat
      R
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • cromwell-on-gcp-workbench-engine-installer

      Public
      Documentation and tools for creating a Cromwell installation on GCP compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•3•0•1•Updated Mar 3, 2026Mar 3, 2026

    • cromwell-on-azure-workbench-engine-installer

      Public
      Documentation and tools for creating a CromwellOnAzure installation compatible with DNAstack's Workbench.
      HCL
      •
      GNU Lesser General Public License v2.1
      •0•1•0•1•Updated Mar 3, 2026Mar 3, 2026

    • wdl-ci

      Public
      Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
      wdl
      wdl
      Python
      •
      GNU General Public License v2.0
      •1•5•1•3•Updated Mar 3, 2026Mar 3, 2026

    • bioinformatics-public-docker-images

      Public
      Dockerfile
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • bioinformatics-scripts

      Public
      Scripts and resources for the bioinformatics team
      Shell
      •
      GNU General Public License v2.0
      •0•3•0•0•Updated Mar 3, 2026Mar 3, 2026

    • logback-extensions

      Public
      Extensions to logback for smoother integration with cloud environments.
      Java
      •
      Apache License 2.0
      •0•0•0•2•Updated Mar 3, 2026Mar 3, 2026

    • actuator-e2e-test

      Public
      Library for testing /actuator endpoint
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 3, 2026Mar 3, 2026

    • ga4gh-search-adapter-google-sheets

      Public
      Dataset API wrapper for Google Sheets
      Java
      •
      Apache License 2.0
      •0•1•0•3•Updated Mar 3, 2026Mar 3, 2026

    • cromwell-wes-service

      Public
      Java
      •
      GNU Lesser General Public License v2.1
      •1•10•0•1•Updated Mar 3, 2026Mar 3, 2026

    • data-connect-trino

      Public
      Cloned from https://github.com/DNAstack/ga4gh-search-adapter-presto
      publisheractivetrino
      publisheractivetrinodata-connect
      Java
      •
      Apache License 2.0
      •3•4•3•11•Updated Feb 5, 2026Feb 5, 2026