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    12 repositories

    • snakemake

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      Python
      •
      MIT License
      •633•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • snakemake-wrappers

      Public
      This is the development home of the Snakemake wrapper repository, see
      Python
      •210•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • mmaomics-sm

      Public
      A snakemake workflow to reproduce the mmaomics paper results from public data only.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 12, 2025Sep 12, 2025

    • PROTRIDER

      Public
      Python
      •4•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • bulkpy

      Public
      A helper library for managing bulk'omics data with mudata
      Python
      •
      MIT License
      •1•0•0•1•Updated May 30, 2025May 30, 2025

    • mudata

      Public
      Multimodal Data (.h5mu) implementation for Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • drop

      Public
      Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
      Python
      •
      MIT License
      •56•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • mthfr-and-friends

      Public
      A repository for the ap ms analysis of MTHFR
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • bulkR

      Public
      Helpers for multi omics bulk analyses
      R
      •
      Other
      •0•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • froesRtools

      Public
      What the Package Does (One Line, Title Case)
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • crispr-ngs-pipline

      Public archive
      A work-in-progress pipeline to identify cripsr off-target effects using somatic variant calling
      Python
      •0•0•1•0•Updated May 3, 2024May 3, 2024

    • ACMGuru

      Public
      What good are standards if they are not automated?
      R
      •
      Other
      •1•0•0•0•Updated Apr 18, 2024Apr 18, 2024
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