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@Jacobson-CompSysBio Jacobson CompSysBio Team

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    11 repositories

    • mentor-rl

      Public
      reinforcement learning with MENTOR output
      Python
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • GRN-LOOPy

      Public
      This project contains code for network pre and post processing.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Mar 30, 2026Mar 30, 2026

    • GP-Transformer

      Public
      Transformer model for Genomic Prediction
      Jupyter Notebook
      •1•1•0•0•Updated Mar 23, 2026Mar 23, 2026

    • MENTOR-py

      Public
      MENTOR: Mechanistic Exploration of Networks for Team-based Omics Research
      R
      •
      MIT License
      •1•2•4•0•Updated Dec 16, 2025Dec 16, 2025

    • RandomWalkRestartMH

      Public
      A package to perform Random Walk with Restart on different types of networks
      R
      •11•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • SNPtoGene

      Public
      This repository contains a codebase with multiple options for calculating SNP to Gene Assignments via linear proximity, MAGMA, and eQTL assignment.
      R
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • JAIL-Data-Curation-Benchmark

      Public
      Jupyter Notebook
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • JAILLM

      Public
      Fine-Tuning Large Language Models for Network Analysis
      Jupyter Notebook
      •0•0•0•0•Updated Apr 11, 2025Apr 11, 2025

    • JAIL-RAG

      Public
      Developing RAG for Biological Graphs
      Jupyter Notebook
      •0•0•3•0•Updated Mar 24, 2025Mar 24, 2025

    • scikit-learn

      Public
      scikit-learn: machine learning in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27k•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • RangerBasediRF

      Public
      C++
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024
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