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    22 repositories

    • jiang2025

      Public
      Data and code for Jiang 2025
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

    • wu2025

      Public
      Data and code for Wu 2025
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

    • shaoliao2025

      Public
      Data and code for Shao and Liao 2025
      R
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Jan 21, 2025Jan 21, 2025

    • wangortega2025

      Public
      Data and code for Wang and Ortega 2025
      MATLAB
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • aboharbdavoudian2025

      Public
      A set of scripts used to analyze data from whole brain lightsheet experiments.
      Python
      •0•3•0•0•Updated Jan 10, 2025Jan 10, 2025

    • liao2025

      Public
      Data and code for Liao*, O'Farrell*, et al., bioRxiv
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 29, 2024Dec 29, 2024

    • woodburn2024

      Public
      Data for Woodburn 2024
      0•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • HTR

      Public
      A magnetic ear tag system for recording head-twitch responses.
      MATLAB
      •1•3•0•0•Updated Jan 26, 2024Jan 26, 2024

    • jefferson2023

      Public
      Data and code for Jefferson et al., Neuropsychopharmacology, 2023
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated May 31, 2023May 31, 2023

    • davoudian2023

      Public
      Data and code for Davoudian et al., ACS Chem Neurosci, 2023
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 3, 2023May 3, 2023

    • phoumthipphavong2016

      Public
      Data and code for Phoumthipphavong et al., eNeuro, 2016
      MATLAB
      •0•0•0•0•Updated Aug 1, 2022Aug 1, 2022

    • behavioral-rigs

      Public
      Steps to set up a two-choice behavioral rig for a head-fixed mouse
      Scilab
      •2•6•0•0•Updated Jun 6, 2022Jun 6, 2022

    • cellROI2

      Public
      A GUI for working with fluorescence imaging files
      MATLAB
      •1•0•0•0•Updated Feb 4, 2022Feb 4, 2022

    • wang2022

      Public
      Data and code for Wang et al., eNeuro, 2022
      MATLAB
      •2•2•0•0•Updated Jan 10, 2022Jan 10, 2022

    • shao2021

      Public
      Data and code for Shao et al., Neuron, 2021
      MATLAB
      •0•1•0•0•Updated Jul 4, 2021Jul 4, 2021

    • ali2020

      Public
      Data and code for Ali et al., Nature Communications, 2020
      MATLAB
      •0•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • kwan2012

      Public
      Data for Figure 1 in Kwan and Dan, Current Biology, 2012
      0•0•0•0•Updated Jul 6, 2020Jul 6, 2020

    • ali2020a

      Public
      Data and code for Ali et al., Molecular Psychiatry, 2020
      MATLAB
      •0•0•0•0•Updated Jun 26, 2020Jun 26, 2020

    • siniscalchi2019

      Public
      Data and code for Siniscalchi et al., Cereb Cortex, 2019
      MATLAB
      •0•2•2•0•Updated Mar 24, 2020Mar 24, 2020

    • barthas2020

      Public
      Data and code for Barthas et al., Biol Psychiatry, 2020
      MATLAB
      •0•0•0•0•Updated Mar 24, 2020Mar 24, 2020

    • GLM_example

      Public
      GLM-based analysis of calcium signals (includes a toy example)
      MATLAB
      •0•8•0•0•Updated Dec 10, 2018Dec 10, 2018

    • joy

      Public
      Generates a joyplot movie.
      MATLAB
      •1•2•0•0•Updated Jun 24, 2018Jun 24, 2018
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