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    18 repositories

    • intro-programming

      Public
      Manual for the Introduction to Programming course at the University of Twente, spring 2024
      Jupyter Notebook
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • steerable-shape-synthesis

      Public
      Code for the paper "Steerable Anatomical Shape Synthesis with Implicit Neural Representations"
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • augmentations-for-the-unknown

      Public
      This repository contains the official implementation of "Data-Agnostic Augmentations for Unknown Variations - Out-of-Distribution Generalisation in MRI Segmentation", under review at MIDL 2025.
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Aug 18, 2025Aug 18, 2025

    • dlmia-course

      Public
      Materials for Deep learning in medical image analysis course
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Apr 2, 2025Apr 2, 2025

    • lab-gatr

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • SIRE-segmentation

      Public
      Python
      •
      MIT License
      •4•6•1•0•Updated Sep 26, 2024Sep 26, 2024

    • segnn-hemodynamics

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • coronary-mesh-convolution

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • IDIR

      Public
      Code for the MIDL 2022 paper Implicit Neural Representations for Deformable Image Registration
      Python
      •
      MIT License
      •11•52•6•1•Updated Jul 2, 2024Jul 2, 2024

    • SIRE

      Public
      Python
      •0•3•0•0•Updated Jun 5, 2024Jun 5, 2024

    • CoW_topology_extraction

      Public
      Python
      •
      MIT License
      •0•3•0•0•Updated May 28, 2024May 28, 2024

    • carotid-segmentation

      Public
      The source code of the winning algorithm of the MICCAI Grand Challenge Carotid Artery Vessel Wall Segmentation Challenge
      Python
      •
      MIT License
      •2•13•4•0•Updated Apr 15, 2024Apr 15, 2024

    • Brain-Shift

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Feb 28, 2024Feb 28, 2024

    • DL-Circ-Tumour-Cells

      Public
      Python
      •0•0•0•0•Updated Dec 22, 2023Dec 22, 2023

    • IMPLICIT-CELL-SURFACES

      Public
      Code for MedIA 2024 paper "Generative modeling of living cells with SO(3)-equivariant implicit neural representations" and MICCAI 2022 paper "Implicit Neural Representations for Generative Modeling of Living Cell Shapes"
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•13•0•0•Updated Oct 16, 2023Oct 16, 2023

    • .github

      Public
      0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • SRML-1D

      Public
      Code for the IEEE TMI paper Super-Resolved Microbubble Localization in Single-Channel Ultrasound RF Signals Using Deep Learning
      Python
      •
      MIT License
      •2•7•0•0•Updated Nov 3, 2022Nov 3, 2022

    • NEMESIS

      Public
      NEMESIS: NEural iMplicit rEpresentation for whole Slide Image regiStration
      Jupyter Notebook
      •0•5•0•0•Updated Aug 25, 2022Aug 25, 2022