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    17 repositories

    • pyeed

      Public
      🧬 Toolkit to create, annotate, and analyze specialized sequence databases
      bioinformatics
      Python
      •
      MIT License
      •6•5•19•1•Updated Dec 21, 2025Dec 21, 2025

    • TEM-lactamase

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • structure-align

      Public
      Tool to align protein structures with differing lengths
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 15, 2025Jun 15, 2025

    • TemStaProTesting

      Public
      TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
      Jupyter Notebook
      •
      MIT License
      •17•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • CANDy

      Public
      CANDy allows the domain detection and annotation of protein sequences from any CAZy family.
      Jupyter Notebook
      •1•2•0•1•Updated Apr 14, 2025Apr 14, 2025

    • .github

      Public
      0•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • aligner

      Public
      Rust
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • PyEED_JupyterLab

      Public
      🐳 Docker image with JupyterLab and pyeed
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • PHA-Depolymerases

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • data-models

      Public
      MIT License
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • prototyping

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • colab-example

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 27, 2024Feb 27, 2024

    • LED-DB

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

    • TEMdatabase

      Public
      TEM adaptive database for a personal update and discovery on new TEM beta lactamases
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • PyEED-jupyternotebook

      Public
      Jupyter notebook datamodel
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 1, 2023Feb 1, 2023

    • PAZy

      Public
      Reading in data from PAZy using the pyeed-data-model
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 17, 2023Jan 17, 2023

    • sdrdm-template

      Public template
      Python
      •10•0•0•0•Updated Aug 29, 2022Aug 29, 2022