Repositories list

• timsbuktoolkit

  Public
  Rust

  •

  Apache License 2.0

  •11 fork•55 stars•22 issues•22 pull requests•Updated Apr 17, 2026Apr 17, 2026

• 2023_scispot_utils

  Public
  Common scispot utility functions

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 19, 2026Jan 19, 2026

• gopher

  Public
  Gene ontology enrichment analysis using protein expression.

  tool

  tool

  Python

  •

  Apache License 2.0

  •11 fork•44 stars•22 issues•00 pull requests•Updated Dec 9, 2025Dec 9, 2025

• regulome-summit

  Public
  A Symposium for the Intersection of Gene Regulation, ‘Undruggables’, and AI Drug Discovery.

  SCSS

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2025Sep 15, 2025

• vizta

  Public
  Plotting themes for Talus Bio

  Python

  •

  Apache License 2.0

  •00 forks•33 stars•11 issue•11 pull request•Updated Sep 1, 2025Sep 1, 2025

• timsquery

  Public archive
  General tools to extract chromatograms from timsTOF data

  tool

  tool

  Rust

  •

  Apache License 2.0

  •11 fork•33 stars•44 issues•00 pull requests•Updated Jun 5, 2025Jun 5, 2025

• cortado

  Public
  Predict the retention times for missing peptides in an MS run.

  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• talusbio-at-asms

  Public
  A website with all of our ASMS presentations.

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 27, 2025May 27, 2025

• 2024_dev_talus_prospect

  Public
  Python

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2025Feb 17, 2025

• timsseek

  Public
  A peptide-centric search tool for diaPASEF data.

  Rust

  •

  Apache License 2.0

  •00 forks•1111 stars•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• ionmesh

  Public archive
  tool

  tool

  Rust

  •

  Apache License 2.0

  •00 forks•77 stars•11 issue•11 pull request•Updated Oct 8, 2024Oct 8, 2024

• tdf_simulator

  Public
  It simulates tdf files ...

  tool

  tool

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 5, 2024Sep 5, 2024

• quantms

  Public
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quant…

  Nextflow

  •

  MIT License

  •5454 forks•00 stars•00 issues•00 pull requests•Updated Aug 12, 2024Aug 12, 2024

• petasus

  Public
  Utilties for working with DDA search results from Sage and Comet.

  Python

  •

  Apache License 2.0

  •00 forks•11 star•22 issues•22 pull requests•Updated Jul 2, 2024Jul 2, 2024

• flimsay

  Public
  tool

  tool

  Python

  •00 forks•11 star•00 issues•11 pull request•Updated Feb 1, 2024Feb 1, 2024

• cookiecutter-data-science

  Public
  A template for data science projects at Talus Bio

  pythondata-sciencecookiecutter+ 1

  pythondata-sciencecookiecuttercookiecutter-datascience

  Python

  •

  MIT License

  •11 fork•22 stars•11 issue•22 pull requests•Updated Dec 12, 2023Dec 12, 2023

• diadem

  Public
  Python

  •

  Apache License 2.0

  •11 fork•88 stars•1212 issues•22 pull requests•Updated Dec 5, 2023Dec 5, 2023

• nf-encyclopedia

  Public
  A NextFlow pipeline for chromatogram library DIA proteomics workflows

  workflowbioinformaticspipeline+ 3

  workflowbioinformaticspipelinenextflowproteomicsdata-independent-acquisition

  Nextflow

  •

  Apache License 2.0

  •44 forks•88 stars•22 issues•22 pull requests•Updated Dec 4, 2023Dec 4, 2023

• talus_drc_helper

  Public
  Helps you make dose response curves

  apptool

  apptool

  Python

  •00 forks•00 stars•33 issues•00 pull requests•Updated Nov 16, 2023Nov 16, 2023

• talus_smiles_helper

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2023Jun 1, 2023

• talus-quarto-theme

  Public
  A Talus-branded Quarto theme

  SCSS

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 11, 2023Apr 11, 2023

• cookiecutter-streamlit

  Public
  cookiecutter

  cookiecutter

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•1414 pull requests•Updated Mar 1, 2023Mar 1, 2023

• alphatims

  Public
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistr…

  Python

  •

  Apache License 2.0

  •2929 forks•00 stars•00 issues•00 pull requests•Updated Feb 28, 2023Feb 28, 2023

• talus-aws-utils

  Public
  Talus AWS Utils

  tool

  tool

  Python

  •

  MIT License

  •00 forks•00 stars•11 issue•1818 pull requests•Updated Jan 24, 2023Jan 24, 2023

• talus-utils

  Public archive
  tool

  tool

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•1818 pull requests•Updated Oct 21, 2022Oct 21, 2022

• talus-standard-report

  Public
  Talus Standard Report to see standard data analyses.

  toolstreamlit

  toolstreamlit

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 25, 2022Apr 25, 2022

• talus-dlib-utils

  Public
  How to create Prosit DLIBs for EncyclopeDIA

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 28, 2022Mar 28, 2022

• diatherm

  Public
  Create DIA method files for Thermo instruments from a template method.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2022Feb 4, 2022

• DIAscope

  Public
  DIAscope is a tool to work with .dia data.

  tool

  tool

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 4, 2022Feb 4, 2022

• docker-bioconda-tools

  Public
  A docker image for our commonly used Bioconda packages.

  Dockerfile

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 30, 2021Nov 30, 2021