Repositories list

• cobramod

  Public
  CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway information from various m…

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •11 fork•1616 stars•11 issue•11 pull request•Updated Mar 12, 2026Mar 12, 2026

• MLDynamicMetabolicControl

  Public
  Dynamic Metabolic Control using Neural Net Surrogates

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• CataPro

  Public
  A generalized enzyme kinetics parameter prediction model.

  Python

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  MIT License

  •2020 forks•00 stars•00 issues•00 pull requests•Updated Jul 4, 2025Jul 4, 2025

• DEKP

  Public
  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jul 1, 2025Jul 1, 2025

• mmon-gcm

  Public
  MMON-GCM

  HTML

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 2, 2024Jul 2, 2024

• escher-legacy

  Public
  Build, share, and embed visualizations of metabolic pathways.

  JavaScript

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  Other

  •8080 forks•00 stars•00 issues•11 pull request•Updated Feb 19, 2024Feb 19, 2024

• Multiscale_Modelling_Phaeodactylum

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2024Feb 9, 2024

• Anatomical_Constraints_C4

  Public
  This repository stores the code and files associated with the "Development and analysis of mathematical models to study metabolic constraints and capacities in …

  Jupyter Notebook

  •11 fork•11 star•00 issues•00 pull requests•Updated Nov 23, 2023Nov 23, 2023

• Lectures

  Public
  Digital component of the teaching activities of the "Metabolic Reconstruction and Flux Modelling" research group.

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 15, 2023Feb 15, 2023