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    18 repositories

    • Living_Circuit_Boards

      Public
      Files accompanying Doosthosseini H. et al. (2025)
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 21, 2025Nov 21, 2025

    • npspec-webapp

      Public
      Webapp to display predicted spectral data for metabolites
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • bioHSI

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • npspec

      Public
      HTML Website for browsing predicted spectra of metabolites
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • dnaplotlib

      Public
      DNA plotting library for Python
      Python
      •
      MIT License
      •70•300•2•1•Updated Mar 20, 2024Mar 20, 2024

    • plant-microbe-communication

      Public
      Files accompanying Boo and Toth et al. (2023)
      ImageJ Macro
      •1•1•0•0•Updated Jan 29, 2024Jan 29, 2024

    • DNA_sentinels

      Public
      Files accompanying Nou et al. (2023)
      Jupyter Notebook
      •0•0•0•0•Updated Aug 4, 2023Aug 4, 2023

    • EcN_analysis

      Public
      Files accompanying Triassi, et al. (2023)
      Jupyter Notebook
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

    • linalool_pathway_simulation

      Public
      Files accompanying JH Park et. al. 2022
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2022Oct 22, 2022

    • ripp-design

      Public
      Jupyter notebooks and associated data for designing enzyme-modified peptides
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Nov 23, 2021Nov 23, 2021

    • ripp-analysis

      Public
      Code and notebooks for analysis of LC-MS data of RiPP modification
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2021Nov 19, 2021

    • constr-peptide-paper-figs

      Public
      Code used to generate plots in "Selection for constrained peptides that bind to a single target protein" Andrew M. King, et al.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 21, 2021Sep 21, 2021

    • Promoter_Activity_Quantification

      Public
      Files accompanying Shao, et al. (2020)
      MATLAB
      •0•1•0•0•Updated Oct 14, 2020Oct 14, 2020

    • Comprehensive_Genetic_Circuit_Analysis

      Public
      Files accompanying Espah Borujeni, et al. (2020)
      Python
      •
      MIT License
      •1•3•0•0•Updated Jul 3, 2020Jul 3, 2020

    • biofilms

      Public
      Files accompanying Moser, et al. (2019) Biofilm paper
      0•2•0•0•Updated Apr 25, 2019Apr 25, 2019

    • promoter-library-design-tool

      Public
      Relevant files for Moser, et al (2018). Dynamic control of endogenous metabolism with combinatorial logic circuits.
      MATLAB
      •2•1•0•0•Updated Nov 17, 2018Nov 17, 2018

    • predict-lab-origin

      Public
      Software for article "Deep learning to predict the lab-of-origin of engineered DNA"
      Python
      •9•13•1•0•Updated Aug 7, 2018Aug 7, 2018

    • MIT-BroadFoundry

      Public
      Tools developed as part of the MIT-Broad Foundry for Synthetic Biology
      Python
      •
      MIT License
      •3•7•0•0•Updated Sep 29, 2017Sep 29, 2017