Skip to content
Change the repository type filter

All

    Repositories list

    • LevSeq

      Public
      Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.
      Makefile
      41100Updated Jan 25, 2026Jan 25, 2026
    • CSR-SALAD

      Public
      Jupyter Notebook
      0010Updated Nov 14, 2025Nov 14, 2025
    • Database for directed evolution and enzyme engineering
      Jupyter Notebook
      21020Updated Oct 10, 2025Oct 10, 2025
    • ALDE simulation runs for SSMuLA (Site Saturation Mutagenesis Landscape Analysis), the code base paper titled "Evaluation of Machine Learning-Assisted Directed E…
      Python
      0100Updated Jun 19, 2025Jun 19, 2025
    • SSMuLA

      Public
      Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"
      Jupyter Notebook
      11500Updated Jun 19, 2025Jun 19, 2025
    • LevSeq_db

      Public
      Visualization for the LevSeq project
      Python
      0000Updated May 22, 2025May 22, 2025
    • Substrate-Aware Zero-Shot Predictors for Non-Native Enzyme Activities
      Python
      1500Updated Apr 18, 2025Apr 18, 2025
    • Python
      0000Updated Sep 20, 2024Sep 20, 2024
    • evSeq

      Public
      Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
      Python
      93460Updated Jun 1, 2022Jun 1, 2022
    • MLDE

      Public
      A machine-learning package for navigating combinatorial protein fitness landscapes.
      Python
      2713331Updated Nov 17, 2021Nov 17, 2021
    • SPGen

      Public
      Jupyter Notebook
      42020Updated Mar 31, 2021Mar 31, 2021
    • Jupyter Notebook
      3112760Updated Feb 16, 2021Feb 16, 2021
    • channels

      Public
      Gaussian process models for optimizing channelrhodopsin properties.
      Jupyter Notebook
      131320Updated May 30, 2020May 30, 2020
    • Python
      74000Updated Oct 3, 2019Oct 3, 2019